Evidence map›Paper›PMID 24825865›Full record

ArticleBlood2014

Integrated genomic sequencing reveals mutational landscape of T-cell prolymphocytic leukemia.

Mark J Kiel, Thirunavukkarasu Velusamy, Delphine Rolland, Anagh A Sahasrabuddhe, Fuzon Chung, Nathanael G Bailey, Alexandra Schrader, Bo Li, Jun Z Li, Ayse B Ozel and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 155 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed, 1 pooled it
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed, 1 synthesis or guideline pooled it, 252 citations in OpenAlex.

  1. Advances and Perspectives in the Treatment of T-PLL.Current hematologic malignancy reports · 2020
    Pooled it
  2. Trial
  3. Trial
  4. Trial
  5. Trial
  6. Trial
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The Significance of the Microenvironment in T/Nk-Cell Neoplasms.International journal of molecular sciences · 2025
    Review
  19. Article
  20. Article

95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 2 countries.

Mark J KielDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI;
Thirunavukkarasu VelusamyDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI;
Delphine RollandDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI;
Anagh A SahasrabuddheDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI;
Fuzon ChungDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI;
Nathanael G BaileyDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI;
Alexandra SchraderLaboratory of Lymphocyte Signaling and Oncoproteome, Department of Medicine, University of Cologne, Cologne, Germany;
Bo LiDepartment of Computational Medicine and Bioinformatics and.
Jun Z LiDepartment of Computational Medicine and Bioinformatics and Department of Human Genetics, University of Michigan, Ann Arbor, MI;
Ayse B OzelDepartment of Human Genetics, University of Michigan, Ann Arbor, MI;
Bryan L BetzDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI;
Roberto N MirandaThe University of Texas MD Anderson Cancer Center, Houston, TX; and.
L Jeffrey MedeirosThe University of Texas MD Anderson Cancer Center, Houston, TX; and.
Lili ZhaoDepartment of Biostatistics, University of Michigan Medical School, Ann Arbor, MI.
Marco HerlingLaboratory of Lymphocyte Signaling and Oncoproteome, Department of Medicine, University of Cologne, Cologne, Germany;
Megan S LimDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI;
Kojo S J Elenitoba-JohnsonDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI;
University of Michigan–Ann Arbor · USThe University of Texas MD Anderson Cancer Center · USUniversity of Cologne · DE

Funding

Proteomic analysis of api2-MALT1 positive gastric MALT lymphomaR01CA136905 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELENITOBA-JOHNSON, KOJO S. J. · 2009 to 2013
$1.4M
Proteomic biomarkers of ALK+ lymphomaR01CA140806 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LIM, MEGAN S. · 2010 to 2013
$1.2M
NCI NIH HHS R01 CA136905NCI NIH HHS R01CA136905NCI NIH HHS R01 CA140806NCI NIH HHS R01CA140806NIDCR NIH HHS R01DE119249
6 · The paper itself

Abstract

The comprehensive genetic alterations underlying the pathogenesis of T-cell prolymphocytic leukemia (T-PLL) are unknown. To address this, we performed whole-genome sequencing (WGS), whole-exome sequencing (WES), high-resolution copy-number analysis, and Sanger resequencing of a large cohort of T-PLL. WGS and WES identified novel mutations in recurrently altered genes not previously implicated in T-PLL including EZH2, FBXW10, and CHEK2. Strikingly, WGS and/or WES showed largely mutually exclusive mutations affecting IL2RG, JAK1, JAK3, or STAT5B in 38 of 50 T-PLL genomes (76.0%). Notably, gain-of-function IL2RG mutations are novel and have not been reported in any form of cancer. Further, high-frequency mutations in STAT5B have not been previously reported in T-PLL. Functionally, IL2RG-JAK1-JAK3-STAT5B mutations led to signal transducer and activator of transcription 5 (STAT5) hyperactivation, transformed Ba/F3 cells resulting in cytokine-independent growth, and/or enhanced colony formation in Jurkat T cells. Importantly, primary T-PLL cells exhibited constitutive activation of STAT5, and targeted pharmacologic inhibition of STAT5 with pimozide induced apoptosis in primary T-PLL cells. These results for the first time provide a portrait of the mutational landscape of T-PLL and implicate deregulation of DNA repair and epigenetic modulators as well as high-frequency mutational activation of the IL2RG-JAK1-JAK3-STAT5B axis in the pathogenesis of T-PLL. These findings offer opportunities for novel targeted therapies in this aggressive leukemia.

Indexed as

MutationAdultAgedAged, 80 and overAmino Acid SequenceAtaxia Telangiectasia Mutated ProteinsBase SequenceCell DeathCohort StudiesComputer SimulationDNA Copy Number VariationsDNA Mutational AnalysisDNA, NeoplasmExomeFemaleHumansAtaxia Telangiectasia Mutated ProteinsATM protein, humanDNA, NeoplasmIL2RG protein, humanInterleukin Receptor Common gamma SubunitJAK1 protein, humanJAK3 protein, humanJanus Kinase 1Janus Kinase 3PimozideSTAT5B protein, humanSTAT5 Transcription Factor

Identifiers

PMID24825865
PMCPMC4148768
OpenAlexW2152434002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.