Evidence map›Paper›PMID 24825356›Full record

ArticlePloS one2014

Evaluation of global differential gene and protein expression in primary Pterygium: S100A8 and S100A9 as possible drivers of a signaling network.

Aihua Hou, Wanwen Lan, Kai Pong Law, Ser Chin Jasmine Khoo, Min Qi Tin, Yoon Pin Lim, Louis Tong

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

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  9. Role of Serine Protease Inhibitors A1 and A3 in Ocular Pathologies.Investigative ophthalmology & visual science · 2024
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  18. Mass spectrometry-based proteomics for pre-eclampsia and preterm birth.International journal of molecular sciences · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Aihua HouOcular Surface Research Group, Singapore Eye Research Institute, Singapore, Singapore.
Wanwen LanOcular Surface Research Group, Singapore Eye Research Institute, Singapore, Singapore.
Kai Pong LawDepartment of Biochemistry, National University of Singapore, Singapore, Singapore; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.
Ser Chin Jasmine KhooOcular Surface Research Group, Singapore Eye Research Institute, Singapore, Singapore.
Min Qi TinOcular Surface Research Group, Singapore Eye Research Institute, Singapore, Singapore.
Yoon Pin LimDepartment of Biochemistry, National University of Singapore, Singapore, Singapore; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.
Louis TongOcular Surface Research Group, Singapore Eye Research Institute, Singapore, Singapore; Department of Biochemistry, National University of Singapore, Singapore, Singapore; Duke-NUS Graduate Medical School, Singapore, Singapore, Singapore; Singapore National Eye Center, Singapore, Singapore; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.
Singapore Eye Research Institute · SGNational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposePterygium is a wing shaped fibrovascular growth on the ocular surface, characterized by fibrosis, angiogenesis, extracellular matrix remodeling, and inflammatory infiltrates. Epidemiologic studies have linked pterygium formation to various chronic inflammatory conditions, such as ultraviolet radiation, sawdust exposure, and dry eye disease. The purpose of this study is to identify proteins that are differentially expressed in primary pterygium by using a combination of gene microarray and proteomic platforms.

methodsPaired pterygium and uninvolved conjunctiva tissues of four patients were evaluated for differences in global gene transcript levels using a genechip microarray. Proteins extracted from another four pairs of tissues were quantified by iTRAQ approach. Western blot and immunofluorescent staining on additional patients were used to validate dysregulated protein expression obtained from microarray and proteomics data. In addition, primary conjunctival fibroblasts were treated with recombinant S100A8, S100A9 or both. Transcript level changes of a panel of potential target genes were evaluated by real time-PCR.

resultsThe following were up-regulated at both protein and transcript levels S100 A8 and A9, aldehyde dehydrogenase 3 family, member1 (ALDH3A1) and vimentin (VIM). Conversely, serpin peptidase inhibitor clade A member 1 (SERPINA1) and transferrin (TF) were down-regulated. Upon adding S100A8, S100A9 or both, the inflammatory chemokine CXCL1, matrix proteins vimentin, biglycan, and gelsolin, as well as annexin-A2, thymosin-β4, chymase (CMA1), member of Ras oncogene family RAB10 and SERPINA1 were found to be up-regulated.

conclusionsWe identified 3 up-regulated and 2 down-regulated proteins by using a stringent approach comparing microarray and proteomic data. On stimulating cells with S100A8/9, a repertoire of key genes found to be up-regulated in pterygium tissue, were induced in these cells. S100A8/9 may be an upstream trigger for inflammation and other disease pathways in pterygium.

Indexed as

Aldehyde Dehydrogenasealpha 1-AntitrypsinBiglycanBlotting, WesternCalgranulin ACalgranulin BChemokine CXCL1Fluorescent Antibody TechniqueGelsolinGene Expression RegulationHumansOligonucleotide Array Sequence AnalysisProteomicsPterygiumReal-Time Polymerase Chain ReactionSignal TransductionAldehyde DehydrogenaseALDH3A1 protein, humanalpha 1-AntitrypsinBGN protein, humanBiglycanCalgranulin ACalgranulin BChemokine CXCL1GelsolinSERPINA1 protein, humanTransferrinVimentin

Identifiers

PMID24825356
PMCPMC4019582
OpenAlexW1996767155

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.