Evidence map›Paper›PMID 24824036›Full record

ArticleRNA biology2014

The binding of TIA-1 to RNA C-rich sequences is driven by its C-terminal RRM domain.

Isabel Cruz-Gallardo, Ángeles Aroca, Menachem J Gunzburg, Andrew Sivakumaran, Je-Hyun Yoon, Jesús Angulo, Cecilia Persson, Myriam Gorospe, B Göran Karlsson, Jacqueline A Wilce and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. eIF5A coordinates the transcription and translation of its target genes.Cellular and molecular life sciences : CMLS · 2026
    Article
  2. Review
  3. Article
  4. Targeting the Hippo pathway in Schwann cells ameliorates peripheral nerve degeneration via a polypharmacological mechanism.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2024
    Article
  5. Article
  6. Review
  7. Regulation of TIA-1 Condensates: ZnFrontiers in molecular biosciences · 2022
    Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. T-cell intracellular antigens in health and disease.Cell cycle (Georgetown, Tex.) · 2015
    Review
  16. RNA recognition and stress granule formation by TIA proteins.International journal of molecular sciences · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 8 institutions in 6 countries.

Isabel Cruz-GallardoInstituto de Bioquímica Vegetal y Fotosíntesis; Centro de Investigaciones Científicas Isla de la Cartuja; Universidad de Sevilla-CSIC; Sevilla, Spain.
Ángeles ArocaInstituto de Bioquímica Vegetal y Fotosíntesis; Centro de Investigaciones Científicas Isla de la Cartuja; Universidad de Sevilla-CSIC; Sevilla, Spain.
Menachem J GunzburgDepartment of Biochemistry and Molecular Biology; Monash University; Clayton, Victoria, Australia.
Andrew SivakumaranDepartment of Biochemistry and Molecular Biology; Monash University; Clayton, Victoria, Australia.
Je-Hyun YoonLaboratory of Genetics; National Institute on Aging-Intramural Research Program; NIH; Baltimore, MD USA.
Jesús AnguloInstituto de Investigaciones Químicas; Centro de Investigaciones Científicas Isla de la Cartuja; Universidad de Sevilla-CSIC; Sevilla, Spain; School of Pharmacy; University of East Anglia; Norwich Research Park; Norwich, UK.
Cecilia PerssonSwedish NMR Centre; University of Gothenburg; Gothenburg, Sweden.
Myriam GorospeLaboratory of Genetics; National Institute on Aging-Intramural Research Program; NIH; Baltimore, MD USA.
B Göran KarlssonSwedish NMR Centre; University of Gothenburg; Gothenburg, Sweden.
Jacqueline A WilceDepartment of Biochemistry and Molecular Biology; Monash University; Clayton, Victoria, Australia.
Irene Díaz-MorenoInstituto de Bioquímica Vegetal y Fotosíntesis; Centro de Investigaciones Científicas Isla de la Cartuja; Universidad de Sevilla-CSIC; Sevilla, Spain.
Australian Regenerative Medicine Institute · AUUniversidad de Sevilla · ESUniversity of Gothenburg · SECentro de Investigaciones Científicas Isla de la Cartuja · ESMonash University · AUNational Institute on Aging · USNorwich Research Park · GBUniversity of Baltimore · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

T-cell intracellular antigen-1 (TIA-1) is a key DNA/RNA binding protein that regulates translation by sequestering target mRNAs in stress granules (SG) in response to stress conditions. TIA-1 possesses three RNA recognition motifs (RRM) along with a glutamine-rich domain, with the central domains (RRM2 and RRM3) acting as RNA binding platforms. While the RRM2 domain, which displays high affinity for U-rich RNA sequences, is primarily responsible for interaction with RNA, the contribution of RRM3 to bind RNA as well as the target RNA sequences that it binds preferentially are still unknown. Here we combined nuclear magnetic resonance (NMR) and surface plasmon resonance (SPR) techniques to elucidate the sequence specificity of TIA-1 RRM3. With a novel approach using saturation transfer difference NMR (STD-NMR) to quantify protein-nucleic acids interactions, we demonstrate that isolated RRM3 binds to both C- and U-rich stretches with micromolar affinity. In combination with RRM2 and in the context of full-length TIA-1, RRM3 significantly enhanced the binding to RNA, particularly to cytosine-rich RNA oligos, as assessed by biotinylated RNA pull-down analysis. Our findings provide new insight into the role of RRM3 in regulating TIA-1 binding to C-rich stretches, that are abundant at the 5' TOPs (5' terminal oligopyrimidine tracts) of mRNAs whose translation is repressed under stress situations.

Indexed as

Nucleotide MotifsProtein Interaction Domains and MotifsBase SequenceBinding SitesGC Rich SequenceHumansNuclear Magnetic Resonance, BiomolecularPoly(A)-Binding ProteinsPosition-Specific Scoring MatricesRNAPoly(A)-Binding ProteinsRNADNA/RNA binding protein (D/RBP)RNA recognition motifs (RRM)saturation transfer difference-NMR (STD-NMR)scaffold independent analysis (SIA)surface plasmon resonance (SPR)TIA-1

Identifiers

PMID24824036
PMCPMC4156507
OpenAlexW2142664123

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.