Evidence map›Paper›PMID 24823669›Full record

ArticleGenome research2014

Population genomics of parallel hybrid zones in the mimetic butterflies, H. melpomene and H. erato.

Nicola J Nadeau, Mayté Ruiz, Patricio Salazar, Brian Counterman, Jose Alejandro Medina, Humberto Ortiz-Zuazaga, Anna Morrison, W Owen McMillan, Chris D Jiggins, Riccardo Papa

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 131 citations in OpenAlex.

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  14. Haplotype tagging reveals parallel formation of hybrid races in two butterfly species.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  16. Review
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  19. Perfect mimicry betweenProceedings. Biological sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 5 countries.

Nicola J NadeauDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom; Department of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, United Kingdom;ORCID http://orcid.org/0000-0002-9319-921X
Mayté RuizDepartment of Biology and Center for Applied Tropical Ecology and Conservation, University of Puerto Rico, Rio Piedras, San Juan, Puerto Rico 00921;
Patricio SalazarDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom; Centro de Investigación en Biodiversidad y Cambio Climático (BioCamb), Universidad Tecnológica Indoamérica, Quito, Ecuador;
Brian CountermanDepartment of Biology, Mississippi State University, Mississippi 39762, USA;
Jose Alejandro MedinaHigh Performance Computing Facility, University of Puerto Rico, San Juan, Puerto Rico, 00921;
Humberto Ortiz-ZuazagaHigh Performance Computing Facility, University of Puerto Rico, San Juan, Puerto Rico, 00921; Department of Computer Science, University of Puerto Rico, Rio Piedras, San Juan, Puerto Rico 00921;
Anna MorrisonDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom;
W Owen McMillanSmithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Panama.ORCID http://orcid.org/0000-0003-2805-2745
Chris D JigginsDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom; Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Panama c.jiggins@zoo.cam.ac.uk.ORCID http://orcid.org/0000-0002-7809-062X
Riccardo PapaDepartment of Biology and Center for Applied Tropical Ecology and Conservation, University of Puerto Rico, Rio Piedras, San Juan, Puerto Rico 00921;
University of Cambridge · GBUniversity of Puerto Rico at Río Piedras · PRSmithsonian Tropical Research Institute · PAMississippi State University · USUniversity of Puerto Rico System · PR

Funding

SCIENCE AND TECHNOLOGY COMPETENCY & EDUCATION CORE (STCE)P20GM103475 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI Humberto Guillermo Ortiz-Zuazaga · 2012 to 2026
$52.9M
Biotechnology and Biological Sciences Research Council BB/G008841/1Biotechnology and Biological Sciences Research Council BB/H01439X/1NIGMS NIH HHS P20 GM103475NIGMS NIH HHS P20GM103475
6 · The paper itself

Abstract

Hybrid zones can be valuable tools for studying evolution and identifying genomic regions responsible for adaptive divergence and underlying phenotypic variation. Hybrid zones between subspecies of Heliconius butterflies can be very narrow and are maintained by strong selection acting on color pattern. The comimetic species, H. erato and H. melpomene, have parallel hybrid zones in which both species undergo a change from one color pattern form to another. We use restriction-associated DNA sequencing to obtain several thousand genome-wide sequence markers and use these to analyze patterns of population divergence across two pairs of parallel hybrid zones in Peru and Ecuador. We compare two approaches for analysis of this type of data-alignment to a reference genome and de novo assembly-and find that alignment gives the best results for species both closely (H. melpomene) and distantly (H. erato, ∼15% divergent) related to the reference sequence. Our results confirm that the color pattern controlling loci account for the majority of divergent regions across the genome, but we also detect other divergent regions apparently unlinked to color pattern differences. We also use association mapping to identify previously unmapped color pattern loci, in particular the Ro locus. Finally, we identify a new cryptic population of H. timareta in Ecuador, which occurs at relatively low altitude and is mimetic with H. melpomene malleti.

Indexed as

Genome, InsectAnimalsButterfliesChromosome MappingEvolution, MolecularGenetic LociGenetic SpeciationGenetic VariationPhenotypePhylogenyPigmentationWings, Animal

Identifiers

PMID24823669
PMCPMC4120085
OpenAlexW2044992222

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.