ArticlePloS one2014
RNAbrowse: RNA-Seq de novo assembly results browser.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
14 citing papers in PubMed.
- Diversity ofAnimals : an open access journal from MDPI · 2022Article
- Transcriptome Profiling of the Pacific OysterMarine drugs · 2021Article
- Siberian sturgeon multi-tissue reference transcriptome database.Database : the journal of biological databases and curation · 2020Article
- Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology.Scientific data · 2019Article
- Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle.BMC genomics · 2018Article
- Transcriptomic responses of the endangered freshwater mussel Margaritifera margaritifera to trace metal contamination in the Dronne River, France.Environmental science and pollution research international · 2017Article
- Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotype.Journal of experimental botany · 2017Article
- De novo transcriptome sequencing and analysis of freshwater snail (Radix balthica) to discover genes and pathways affected by exposure to oxazepam.Ecotoxicology (London, England) · 2017Article
- Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.BMC genomics · 2016Article
- Jflow: a workflow management system for web applications.Bioinformatics (Oxford, England) · 2016Article
- GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas.BMC bioinformatics · 2015Article
- The BioMart community portal: an innovative alternative to large, centralized data repositories.Nucleic acids research · 2015Article
- Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes.Frontiers in genetics · 2015Review
- jvenn: an interactive Venn diagram viewer.BMC bioinformatics · 2014Article
Corrections and comments
- Erratum issued
Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse. This article presents a user oriented storage and visualisation environment permitting to explore the data in a top-down manner, going from general graphical views to all possible details. The software package is based on biomart, easy to install and populate with local data. The software package is available under the GNU General Public License (GPL) at http://bioinfo.genotoul.fr/RNAbrowse.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.