ArticlePloS one2014
Genome-wide transcriptome profiling revealed cotton fuzz fiber development having a similar molecular model as Arabidopsis trichome.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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23 citing papers in PubMed, 58 citations in OpenAlex.
- Genome-Wide and Expression Pattern Analysis of the DVL Gene Family RevealsInternational journal of molecular sciences · 2024Article
- Genome-Wide Identification and Characterization ofFrontiers in genetics · 2022Article
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- Comparative transcriptome analysis of fiber and nonfiber tissues to identify the genes preferentially expressed in fiber development in Gossypium hirsutum.Scientific reports · 2021Article
- Large-fragment insertion activates gene GaFZ (Ga08G0121) and is associated with the fuzz and trichome reduction in cotton (Gossypium arboreum).Plant biotechnology journal · 2021Article
- Genetic mapping and transcriptomic characterization of a new fuzzless-tufted cottonseed mutant.G3 (Bethesda, Md.) · 2021Article
- GaHD1, a candidate gene for the Gossypium arboreum SMA-4 mutant, promotes trichome and fiber initiation by cellular HPlant molecular biology · 2020Article
- Article
- A Retrotransposon Insertion inFrontiers in plant science · 2020Article
- Comparative Proteomic Analysis of Molecular Differences between Leaves of Wild-Type Upland Cotton and ItsMolecules (Basel, Switzerland) · 2019Article
- Article
- Genome-wide analysis of cotton C2H2-zinc finger transcription factor family and their expression analysis during fiber development.BMC plant biology · 2019Article
- Fine mapping and identification of the fuzzless gene GaFzl in DPL972 (Gossypium arboreum).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Evolutionary comparison of competitive protein-complex formation of MYB, bHLH, and WDR proteins in plants.Journal of experimental botany · 2019Article
- Comparative transcriptome analysis of TUCPs in Gossypium hirsutum Ligon-lintless-1 mutant and their proposed functions in cotton fiber development.Molecular genetics and genomics : MGG · 2019Article
- Genetic dissection of the fuzzless seed trait in Gossypium barbadense.Journal of experimental botany · 2018Article
- Advances in the MYB-bHLH-WD Repeat (MBW) Pigment Regulatory Model: Addition of a WRKY Factor and Co-option of an Anthocyanin MYB for Betalain Regulation.Plant & cell physiology · 2017Review
- Genome-wide identification and characterization of JAZ gene family in upland cotton (Gossypium hirsutum).Scientific reports · 2017Article
- Identification of candidate genes for fiber length quantitative trait loci through RNA-Seq and linkage and physical mapping in cotton.BMC genomics · 2017Article
- Fine mapping and RNA-Seq unravels candidate genes for a major QTL controlling multiple fiber quality traits at the T1 region in upland cotton.BMC genomics · 2016Article
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The cotton fiber, as a single-celled trichome, is a biological model system for studying cell differentiation and elongation. However, the complexity of gene expression and regulation in the fiber complicates genetic research. In this study, we investigated the genome-wide transcriptome profiling in Texas Marker-1 (TM-1) and five naked seed or fuzzless mutants (three dominant and two recessive) during the fuzz initial development stage. More than three million clean tags were generated from each sample representing the expression data for 27,325 genes, which account for 72.8% of the annotated Gossypium raimondii primary transcript genes. Thousands of differentially expressed genes (DEGs) were identified between TM-1 and the mutants. Based on functional enrichment analysis, the DEGs downregulated in the mutants were enriched in protein synthesis-related genes and transcription factors, while DEGs upregulated in the mutants were enriched in DNA/chromatin structure-related genes and transcription factors. Pathway analysis showed that ATP synthesis, and sugar and lipid metabolism-related pathways play important roles in fuzz initial development. Also, we identified a large number of transcription factors such as MYB, bHLH, HB, WRKY, AP2/EREBP, bZIP and C2H2 zinc finger families that were differently expressed between TM-1 and the mutants, and were also related to trichome development in Arabidopsis.
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