ArticleEvolutionary applications2014
Detection and mapping of QTL for temperature tolerance and body size in Chinook salmon (Oncorhynchus tshawytscha) using genotyping by sequencing.
Article in Evolutionary applications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.
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28 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Meta-Analysis of QTL Mapping and GWAS Reveal Candidate Genes for Heat Tolerance in Small Yellow Croaker,International journal of molecular sciences · 2025Pooled it
- First high-density linkage map based on GBS derived genome wide SNP markers in Labeo catla (Hamilton, 1822).Scientific data · 2026Article
- Naturally segregating genetic variants contribute to thermal tolerance in a Drosophila melanogaster model system.Genetics · 2024Article
- Single Nucleotide Polymorphism Markers with Applications in Conservation and Exploitation of Aquatic Natural Populations.Animals : an open access journal from MDPI · 2023Review
- Whole genome resequencing identifies local adaptation associated with environmental variation for redband trout.Molecular ecology · 2023Article
- Genetic diversity and genome-scale population structure of wild Indian major carp,Frontiers in genetics · 2023Article
- Construction of Three High-Density Genetic Linkage Maps and Dynamic QTL Mapping of Growth Traits in Yellow River Carp (Current issues in molecular biology · 2021Article
- Identification of quantitative trait loci associated with upper temperature tolerance in turbot, Scophthalmus maximus.Scientific reports · 2021Article
- Parentage Analysis in Giant Grouper (Genes · 2021Article
- A high-density SNP-based genetic map and several economic traits-related loci in Pelteobagrus vachelli.BMC genomics · 2020Article
- Genome-wide association mapping and accuracy of predictions for amoebic gill disease in Atlantic salmon (Salmo salar).Scientific reports · 2020Article
- Genetic Variation, GWAS and Accuracy of Prediction for Host Resistance toFrontiers in genetics · 2020Article
- High-Density Linkage Map and QTLs for Growth in Snapper (G3 (Bethesda, Md.) · 2019Article
- Physiological and genomic signatures of evolutionary thermal adaptation in redband trout from extreme climates.Evolutionary applications · 2018Article
- Applications of genotyping by sequencing in aquaculture breeding and genetics.Reviews in aquaculture · 2018Review
- Genetics of resistance to photobacteriosis in gilthead sea bream (Sparus aurata) using 2b-RAD sequencing.BMC genetics · 2018Article
- Genomewide association analyses of fitness traits in captive-reared Chinook salmon: Applications in evaluating conservation strategies.Evolutionary applications · 2018Article
- Using Linkage Maps as a Tool To Determine Patterns of Chromosome Synteny in the GenusG3 (Bethesda, Md.) · 2017Article
- Genomic Changes Associated with Reproductive and Migratory Ecotypes in Sockeye Salmon (Oncorhynchus nerka).Genome biology and evolution · 2017Article
- Mining sequence variations in representative polyploid sugarcane germplasm accessions.BMC genomics · 2017Article
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Authors and funding
2 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Understanding how organisms interact with their environments is increasingly important for conservation efforts in many species, especially in light of highly anticipated climate changes. One method for understanding this relationship is to use genetic maps and QTL mapping to detect genomic regions linked to phenotypic traits of importance for adaptation. We used high-throughput genotyping by sequencing (GBS) to both detect and map thousands of SNPs in haploid Chinook salmon (Oncorhynchus tshawytscha). We next applied this map to detect QTL related to temperature tolerance and body size in families of diploid Chinook salmon. Using these techniques, we mapped 3534 SNPs in 34 linkage groups which is consistent with the haploid chromosome number for Chinook salmon. We successfully detected three QTL for temperature tolerance and one QTL for body size at the experiment-wide level, as well as additional QTL significant at the chromosome-wide level. The use of haploids coupled with GBS provides a robust pathway to rapidly develop genomic resources in nonmodel organisms; these QTL represent preliminary progress toward linking traits of conservation interest to regions in the Chinook salmon genome.
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