Evidence map›Paper›PMID 24821952›Full record

ArticleJournal of experimental botany2014

Comparative analyses of lipidomes and transcriptomes reveal a concerted action of multiple defensive systems against photooxidative stress in Haematococcus pluvialis.

Yunho Gwak, Yong-sic Hwang, Baobei Wang, Minju Kim, Jooyeon Jeong, Choul-Gyun Lee, Qiang Hu, Danxiang Han, EonSeon Jin

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of experimental botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 190 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Yunho GwakDepartment of Life Science, Research Institute for Natural Science, Hanyang University, Seoul, 133-791, South Korea.
Yong-sic HwangDepartment of Bioscience and Biotechnology, Konkuk University, Seoul, 143-701, South Korea.
Baobei WangCollege of Technology and Innovation, Arizona State University, Mesa, AZ 85212, USA.
Minju KimDepartment of Life Science, Research Institute for Natural Science, Hanyang University, Seoul, 133-791, South Korea.
Jooyeon JeongDepartment of Life Science, Research Institute for Natural Science, Hanyang University, Seoul, 133-791, South Korea.
Choul-Gyun LeeDepartment of Biotechnology, Institute of Industrial Biotechnology, Inha University, Incheon, 402-751, South Korea.
Qiang HuCenter for Microalgal Biotechnology and Biofuels, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, Hubei 430072, China.
Danxiang HanCollege of Technology and Innovation, Arizona State University, Mesa, AZ 85212, USA esjin@hanyang.ac.kr Danxiang.Han@asu.edu.
EonSeon JinDepartment of Life Science, Research Institute for Natural Science, Hanyang University, Seoul, 133-791, South Korea esjin@hanyang.ac.kr Danxiang.Han@asu.edu.
Hanyang University · KRArizona State University · USChinese Academy of Sciences · CNInha University · KRKonkuk University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Haematococcus pluvialis cells predominantly remain in the macrozooid stage under favourable environmental conditions but are rapidly differentiated into haematocysts upon exposure to various environmental stresses. Haematocysts are characterized by massive accumulations of astaxanthin sequestered in cytosolic oil globules. Lipidomic analyses revealed that synthesis of the storage lipid triacylglycerol (TAG) was substantially stimulated under high irradiance. Simultaneously, remodelling of membrane glycerolipids occurred as a result of dramatic reductions in chloroplast membrane glycolipids but remained unchanged or declined slightly in extraplastidic membrane glycerolipids. De novo assembly of transcriptomes revealed the genomic and metabolic features of this unsequenced microalga. Comparative transcriptomic analysis showed that so-called resting cells (haematocysts) may be more active than fast-growing vegetative cells (macrozooids) regarding metabolic pathways and functions. Comparative transcriptomic analyses of astaxanthin biosynthesis suggested that the non-mevalonate pathway mediated the synthesis of isopentenyl diphosphate, as the majority of genes involved in subsequent astaxanthin biosynthesis were substantially up-regulated under high irradiance, with the genes encoding phytoene synthase, phytoene desaturase, and β-carotene hydroxylase identified as the most prominent regulatory components. Accumulation of TAG under high irradiance was attributed to moderate up-regulation of de novo fatty acid biosynthesis at the gene level as well as to moderate elevation of the TAG assembly pathways. Additionally, inferred from transcriptomic differentiation, an increase in reactive oxygen species (ROS) scavenging activity, a decrease in ROS production, and the relaxation of over-reduction of the photosynthetic electron transport chain will work together to protect against photooxidative stress in H. pluvialis under high irradiance.

Indexed as

Lipid MetabolismOxidative StressTranscriptomeChlorophytaMolecular Sequence AnnotationSequence Analysis, DNASunlightXanthophyllsastaxanthineXanthophyllsAstaxanthinhigh irradiancelipidomephotooxidative stresstranscriptometriacylglycerol.

Identifiers

PMID24821952
PMCPMC4112636
OpenAlexW2124595222

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.