Evidence map›Paper›PMID 24821787›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes.

Yonghui Zeng, Fuying Feng, Hana Medová, Jason Dean, Michal Koblížek

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
18.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 267 citations in OpenAlex.

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  12. Illuminating the coevolution of photosynthesis and Bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2024
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51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Yonghui ZengDepartment of Phototrophic Microorganisms, Institute of Microbiology CAS, 37981 Třeboň, Czech Republic;
Fuying FengInstitute for Applied and Environmental Microbiology, College of Life Sciences, Inner Mongolia Agricultural University, Huhhot 010018, China; and.
Hana MedováDepartment of Phototrophic Microorganisms, Institute of Microbiology CAS, 37981 Třeboň, Czech Republic;
Jason DeanDepartment of Phototrophic Microorganisms, Institute of Microbiology CAS, 37981 Třeboň, Czech Republic;
Michal KoblížekDepartment of Phototrophic Microorganisms, Institute of Microbiology CAS, 37981 Třeboň, Czech Republic;Faculty of Science, University of South Bohemia, 37005 České Budějovice, Czech Republic koblizek@alga.cz.
Czech Academy of Sciences, Institute of Microbiology · CZInner Mongolia Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photosynthetic bacteria emerged on Earth more than 3 Gyr ago. To date, despite a long evolutionary history, species containing (bacterio)chlorophyll-based reaction centers have been reported in only 6 out of more than 30 formally described bacterial phyla: Cyanobacteria, Proteobacteria, Chlorobi, Chloroflexi, Firmicutes, and Acidobacteria. Here we describe a bacteriochlorophyll a-producing isolate AP64 that belongs to the poorly characterized phylum Gemmatimonadetes. This red-pigmented semiaerobic strain was isolated from a freshwater lake in the western Gobi Desert. It contains fully functional type 2 (pheophytin-quinone) photosynthetic reaction centers but does not assimilate inorganic carbon, suggesting that it performs a photoheterotrophic lifestyle. Full genome sequencing revealed the presence of a 42.3-kb-long photosynthesis gene cluster (PGC) in its genome. The organization and phylogeny of its photosynthesis genes suggests an ancient acquisition of PGC via horizontal transfer from purple phototrophic bacteria. The data presented here document that Gemmatimonadetes is the seventh bacterial phylum containing (bacterio)chlorophyll-based phototrophic species. To our knowledge, these data provide the first evidence that (bacterio)chlorophyll-based phototrophy can be transferred between distant bacterial phyla, providing new insights into the evolution of bacterial photosynthesis.

Indexed as

PhylogenyBacteriaBase SequenceChinaCluster AnalysisFluorometryLakesLikelihood FunctionsMicroscopy, FluorescenceModels, GeneticMolecular Sequence DataPhotosystem II Protein ComplexRNA, Ribosomal, 16SSequence Analysis, DNASpecies SpecificitySpectrum AnalysisPhotosystem II Protein ComplexRNA, Ribosomal, 16Saerobic photoheterotrophanoxygenic photosynthesisbacterial pigmentsfluorescence imaging systemhorizontal gene transfer

Identifiers

PMID24821787
PMCPMC4040607
OpenAlexW2107679249

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.