Evidence map›Paper›PMID 24821059›Full record

ArticleMemorias do Instituto Oswaldo Cruz2014

Mycobacteria mobility shift assay: a method for the rapid identification of Mycobacterium tuberculosis and nontuberculous mycobacteria.

Letícia Muraro Wildner, Maria Luiza Bazzo, Susie Coutinho Liedke, Christiane Lourenço Nogueira, Gabriela Segat, Simone Gonçalves Senna, Aline Daiane Schlindwein, Jaquelline Germano de Oliveira, Darcita B Rovaris, Claudio A Bonjardim and 2 more

Abstract read
In one paragraph

Article in Memorias do Instituto Oswaldo Cruz, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Nontuberculous mycobacterial lung disease in a high tuberculosis incidence setting in Brazil.Jornal brasileiro de pneumologia : publicacao oficial da Sociedade Brasileira de Pneumologia e Tisilogia · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Letícia Muraro WildnerLaboratório de Biologia Molecular e Micobactérias, Universidade Federal de Santa Catarina, Florianópolis, SC, Brasil.
Maria Luiza BazzoLaboratório de Biologia Molecular e Micobactérias, Universidade Federal de Santa Catarina, Florianópolis, SC, Brasil.
Susie Coutinho LiedkeLaboratório de Biologia Molecular e Micobactérias, Universidade Federal de Santa Catarina, Florianópolis, SC, Brasil.
Christiane Lourenço NogueiraLaboratório de Biologia Molecular e Micobactérias, Universidade Federal de Santa Catarina, Florianópolis, SC, Brasil.
Gabriela SegatLaboratório de Biologia Molecular e Micobactérias, Universidade Federal de Santa Catarina, Florianópolis, SC, Brasil.
Simone Gonçalves SennaLaboratório de Biologia Molecular e Micobactérias, Universidade Federal de Santa Catarina, Florianópolis, SC, Brasil.
Aline Daiane SchlindweinLaboratório de Protozoologia, Universidade Federal de Santa Catarina, Florianópolis, SC, Brasil.
Jaquelline Germano de OliveiraLaboratório de Imunologia Celular e Molecular, Centro de Pesquisas René Rachou, Fiocruz, Belo Horizonte, MG, Brasil.
Darcita B RovarisLaboratório Central, Estado de Santa Catarina, Florianópolis, SC, Brasil.
Claudio A BonjardimLaboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil.
Erna G KroonLaboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil.
Paulo C P FerreiraLaboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification of mycobacteria is essential because tuberculosis (TB) and mycobacteriosis are clinically indistinguishable and require different therapeutic regimens. The traditional phenotypic method is time consuming and may last up to 60 days. Indeed, rapid, affordable, specific and easy-to-perform identification methods are needed. We have previously described a polymerase chain reaction-based method called a mycobacteria mobility shift assay (MMSA) that was designed for Mycobacterium tuberculosis complex (MTC) and nontuberculous mycobacteria (NTM) species identification. The aim of this study was to assess the MMSA for the identification of MTC and NTM clinical isolates and to compare its performance with that of the PRA-hsp65 method. A total of 204 clinical isolates (102 NTM and 102 MTC) were identified by the MMSA and PRA-hsp65. For isolates for which these methods gave discordant results, definitive species identification was obtained by sequencing fragments of the 16S rRNA and hsp65 genes. Both methods correctly identified all MTC isolates. Among the NTM isolates, the MMSA alone assigned 94 (92.2%) to a complex or species, whereas the PRA-hsp65 method assigned 100% to a species. A 91.5% agreement was observed for the 94 NTM isolates identified by both methods. The MMSA provided correct identification for 96.8% of the NTM isolates compared with 94.7% for PRA-hsp65. The MMSA is a suitable auxiliary method for routine use for the rapid identification of mycobacteria.

Indexed as

Electrophoretic Mobility Shift AssayBacterial ProteinsBacterial Typing TechniquesDNA, BacterialHumansMycobacterium InfectionsMycobacterium Infections, NontuberculousMycobacterium tuberculosisNontuberculous MycobacteriaPolymerase Chain ReactionRNA, Ribosomal, 16SBacterial ProteinsDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID24821059
PMCPMC4131790

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.