Evidence map›Paper›PMID 24820088›Full record

ArticleAntimicrobial agents and chemotherapy2014

Structural analysis of base substitutions in Thermus thermophilus 16S rRNA conferring streptomycin resistance.

Hasan Demirci, Frank V Murphy, Eileen L Murphy, Jacqueline L Connetti, Albert E Dahlberg, Gerwald Jogl, Steven T Gregory

Abstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Antibiotic Resistance-Susceptibility Profiles ofFrontiers in microbiology · 2017
    Article
  8. Resistance mutations generate divergent antibiotic susceptibility profiles against translation inhibitors.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hasan DemirciDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA.
Frank V MurphyNE-CAT/Cornell University, Argonne, Illinois, USA.
Eileen L MurphyDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA.
Jacqueline L ConnettiDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA.
Albert E DahlbergDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA.
Gerwald JoglDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA.
Steven T GregoryDepartment of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA steven_gregory@brown.edu.

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
POLYSOMES &SUBUNITS: STRUCTURE-FUNCTION RELATIONSHIPSR01GM019756 · NIGMS · BROWN UNIVERSITY · PI DAHLBERG, ALBERT E · 1985 to 2013
$8.5M
Structural Robustness of Ribosome Functional CentersR01GM094157 · NIGMS · BROWN UNIVERSITY · PI GREGORY, STEVEN, JOGL, GERWALD · 2010 to 2024
$4.4M
INDENTATION WITH ATOMIC FORCE MICROSCOPYF32GM019756 · NIGMS · BARNES-JEWISH HOSPITAL · PI COSTA, KEVIN D · 1998 to 1998
–
NCRR NIH HHS 5P41RR015301-10NCRR NIH HHS P41 RR015301NCRR NIH HHS RR-15301NIGMS NIH HHS 8 P41 GM103403-10NIGMS NIH HHS F32 GM019756NIGMS NIH HHS GM019756NIGMS NIH HHS GM094157NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM019756NIGMS NIH HHS R01 GM094157
6 · The paper itself

Abstract

Streptomycin is a bactericidal antibiotic that induces translational errors. It binds to the 30S ribosomal subunit, interacting with ribosomal protein S12 and with 16S rRNA through contacts with the phosphodiester backbone. To explore the structural basis for streptomycin resistance, we determined the X-ray crystal structures of 30S ribosomal subunits from six streptomycin-resistant mutants of Thermus thermophilus both in the apo form and in complex with streptomycin. Base substitutions at highly conserved residues in the central pseudoknot of 16S rRNA produce novel hydrogen-bonding and base-stacking interactions. These rearrangements in secondary structure produce only minor adjustments in the three-dimensional fold of the pseudoknot. These results illustrate how antibiotic resistance can occur as a result of small changes in binding site conformation.

Indexed as

Point MutationAnti-Bacterial AgentsBase PairingBase SequenceBinding SitesCrystallography, X-RayDrug Resistance, BacterialHydrogen BondingModels, MolecularMolecular Sequence DataNucleic Acid ConformationProtein BiosynthesisRibosomal ProteinsRibosome Subunits, Small, BacterialRNA, Ribosomal, 16SStreptomycinAnti-Bacterial AgentsRibosomal Proteinsribosomal protein S12RNA, Ribosomal, 16SStreptomycin

Identifiers

PMID24820088
PMCPMC4136021

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.