Evidence map›Paper›PMID 24817709›Full record

ArticleActa crystallographica. Section F, Structural biology communications2014

Structure of the Arabidopsis thaliana TOP2 oligopeptidase.

Ruiying Wang, Krithika Rajagopalan, Kianoush Sadre-Bazzaz, Magali Moreau, Daniel F Klessig, Liang Tong

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ruiying WangDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Krithika RajagopalanDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Kianoush Sadre-BazzazDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Magali MoreauThe Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY 14850, USA.
Daniel F KlessigThe Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY 14850, USA.
Liang TongDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Columbia University · USCornell University · US

Funding

Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Replacement of an aging X-ray diffraction system for protein crystallographyS10OD012018 · OD · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2012 to 2012
$405k
NIGMS NIH HHS P41 GM111244NIH HHS S10 OD012018
6 · The paper itself

Abstract

Thimet oligopeptidase (TOP) is a zinc-dependent metallopeptidase. Recent studies suggest that Arabidopsis thaliana TOP1 and TOP2 are targets for salicylic acid (SA) binding and participate in SA-mediated plant innate immunity. The crystal structure of A. thaliana TOP2 has been determined at 3.0 Å resolution. Comparisons to the structure of human TOP revealed good overall structural conservation, especially in the active-site region, despite their weak sequence conservation. The protein sample was incubated with the photo-activated SA analog 4-azido-SA and exposed to UV irradiation before crystallization. However, there was no conclusive evidence for the binding of SA based on the X-ray diffraction data. Further studies are needed to elucidate the molecular mechanism of how SA regulates the activity of A. thaliana TOP1 and TOP2.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsHumansMetalloendopeptidasesProtein Structure, SecondaryX-Ray DiffractionArabidopsis ProteinsMetalloendopeptidasesthimet oligopeptidaseArabidopsis thalianathimet oligopeptidase (TOP)

Identifiers

PMID24817709
PMCPMC4014318
OpenAlexW2342098535

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.