Evidence map›Paper›PMID 24817247›Full record

ArticlePloS one2014

An integrated map of HIV-human protein complexes that facilitate viral infection.

Dorothea Emig-Agius, Kevin Olivieri, Lars Pache, Hsin Ling Shih, Olga Pustovalova, Marina Bessarabova, John A T Young, Sumit K Chanda, Trey Ideker

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. The Role of Ku70 as a Cytosolic DNA Sensor in Innate Immunity and Beyond.Frontiers in cellular and infection microbiology · 2021
    Review
  2. Review
  3. Protein-protein interactions of human viruses.Seminars in cell & developmental biology · 2020
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Dorothea Emig-AgiusDepartments of Medicine and Bioengineering, University of California at San Diego, La Jolla, California, United States of America; IP&Science, Thomson Reuters Scientific Inc., Carlsbad, California, United States of America.
Kevin OlivieriSanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
Lars PacheSanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
Hsin Ling ShihSanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
Olga PustovalovaIP&Science, Thomson Reuters Scientific Inc., Carlsbad, California, United States of America.
Marina BessarabovaIP&Science, Thomson Reuters Scientific Inc., Carlsbad, California, United States of America.
John A T YoungThe Salk Institute for Biological Studies, La Jolla, California, United States of America.
Sumit K ChandaSanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
Trey IdekerDepartments of Medicine and Bioengineering, University of California at San Diego, La Jolla, California, United States of America.
Sanford Burnham Prebys Medical Discovery Institute · USThomson Reuters (United States) · USSalk Institute for Biological Studies · US

Funding

Therapeutics Core (Page 286)P30MH062261 · NIMH · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI GENDELMAN, HOWARD E · 2000 to 2021
$37.7M
SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
Molecular Virology and Systems Biology Screening CoreP01AI090935 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI YOUNG, JOHN A T · 2010 to 2014
$20.4M
NIAID NIH HHS 5 P01 AI090935-03NIAID NIH HHS P01 AI090935NIGMS NIH HHS P50 GM085764NIMH NIH HHS P30 MH062261
6 · The paper itself

Abstract

Recent proteomic and genetic studies have aimed to identify a complete network of interactions between HIV and human proteins and genes. This HIV-human interaction network provides invaluable information as to how HIV exploits the host machinery and can be used as a starting point for further functional analyses. We integrated this network with complementary datasets of protein function and interaction to nominate human protein complexes with likely roles in viral infection. Based on our approach we identified a global map of 40 HIV-human protein complexes with putative roles in HIV infection, some of which are involved in DNA replication and repair, transcription, translation, and cytoskeletal regulation. Targeted RNAi screens were used to validate several proteins and complexes for functional impact on viral infection. Thus, our HIV-human protein complex map provides a significant resource of potential HIV-host interactions for further study.

Indexed as

Protein Interaction MapsHEK293 CellsHIV-1HIV InfectionsHost-Pathogen InteractionsHuman Immunodeficiency Virus ProteinsHumansJurkat CellsProtein BindingProtein Interaction MappingProteomicsRNA InterferenceSignal TransductionHuman Immunodeficiency Virus Proteins

Identifiers

PMID24817247
PMCPMC4016004
OpenAlexW1972005313

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.