Evidence map›Paper›PMID 24817128›Full record

ArticlePloS one2014

First functional and mutational analysis of group 3 N-acetylneuraminate lyases from Lactobacillus antri and Lactobacillus sakei 23K.

María Inmaculada García-García, Fernando Gil-Ortiz, Francisco García-Carmona, Alvaro Sánchez-Ferrer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

María Inmaculada García-GarcíaDepartment of Biochemistry and Molecular Biology-A, Faculty of Biology, Regional Campus of International Excellence "Campus Mare Nostrum", University of Murcia, Campus Espinardo, Espinardo, Murcia, Spain; Murcia Biomedical Research Institute (IMIB), El Palmar, Murcia, Spain.
Fernando Gil-OrtizCELLS-ALBA Synchrotron Light Source, Cerdanyola del Vallès, Barcelona, Spain.
Francisco García-CarmonaDepartment of Biochemistry and Molecular Biology-A, Faculty of Biology, Regional Campus of International Excellence "Campus Mare Nostrum", University of Murcia, Campus Espinardo, Espinardo, Murcia, Spain; Murcia Biomedical Research Institute (IMIB), El Palmar, Murcia, Spain.
Alvaro Sánchez-FerrerDepartment of Biochemistry and Molecular Biology-A, Faculty of Biology, Regional Campus of International Excellence "Campus Mare Nostrum", University of Murcia, Campus Espinardo, Espinardo, Murcia, Spain; Murcia Biomedical Research Institute (IMIB), El Palmar, Murcia, Spain.
Universidad de Murcia · ESALBA Synchrotron (Spain) · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

N-acetyl neuraminate lyases (NALs) catalyze the reversible aldol cleavage of N-acetyl neuraminic acid (Neu5Ac) to pyruvate and N-acetyl-D-mannosamine (ManNAc). Previous phylogenetic studies divided NALs into four different groups. Groups 1 and 2 have been well characterized at both kinetic and molecular levels, but no NAL from group 3 has been studied to date. In this work, a functional characterization of two group 3 members was performed using the recombinant NALs from Lactobacillus antri and Lactobacillus sakei 23K, revealing an optimal pH of between 6.0 and 7.0, low stability at basic pHs (>8.0), low optimal temperatures and, especially, low catalytic efficiency compared with their counterparts in group 1 and 2. The mutational analysis carried out showed that a plausible molecular reason for the low activity shown by Lactobacillus antri and Lactobacillus sakei 23k NALs compared with group 1 and 2 NALs could be the relatively small sugar-binding pocket they contain. A functional divergence analysis concluding that group 3 is more closely related to group 2 than to group 1.

Indexed as

DNA Mutational AnalysisAmino Acid SequenceAnti-Infective AgentsBiocatalysisCloning, MolecularEnzyme StabilityHexosaminesHydrogen-Ion ConcentrationLactobacillusModels, MolecularMolecular Sequence DataMutagenesisOxo-Acid-LyasesProtein MultimerizationProtein Structure, QuaternaryPyruvic AcidAnti-Infective AgentsHexosaminesN-acetylmannosamineN-acetylneuraminate lyaseOxo-Acid-LyasesPyruvic Acid

Identifiers

PMID24817128
PMCPMC4016182
OpenAlexW1970931646

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.