Evidence map›Paper›PMID 24816989›Full record

ReviewCell and tissue research2014

The role of 5-hydroxymethylcytosine in human cancer.

Gerd P Pfeifer, Wenying Xiong, Maria A Hahn, Seung-Gi Jin

Open access · greenAbstract readReview
In one paragraph

Review in Cell and tissue research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 119 citations in OpenAlex.

  1. Review
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  13. SCoTCH-seq reveals that 5-hydroxymethylcytosine encodes regulatory information across DNA strands.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Article
  15. Cell identity and 5-hydroxymethylcytosine.Epigenetics & chromatin · 2025
    Review
  16. Article
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  18. Review
  19. Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Gerd P PfeiferBeckman Research Institute, City of Hope Medical Center, 1500 East Duarte Road, Duarte, CA 91010, USA, gpfeifer@coh.org.
Wenying Xiong
Maria A Hahn
Seung-Gi Jin
City Of Hope National Medical Center · US

Funding

UV damage, repair, and mutagenesisR37ES006070 · NIEHS · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI PFEIFER, GERD P · 2004 to 2013
$3.7M
5-hydroxymethylcytosine in human cancerR01CA160965 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI PFEIFER, GERD P · 2012 to 2017
$1.8M
UV DAMAGE, REPAIR AND MUTAGENESISR01ES006070 · NIEHS · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI PFEIFER, GERD P · 1992 to 2003
$1.1M
NCI NIH HHS R01 CA160965NIEHS NIH HHS R01 ES006070NIEHS NIH HHS R37 ES006070
6 · The paper itself

Abstract

The patterns of DNA methylation in human cancer cells are highly abnormal and often involve the acquisition of DNA hypermethylation at hundreds or thousands of CpG islands that are usually unmethylated in normal tissues. The recent discovery of 5-hydroxymethylcytosine (5hmC) as an enzymatic oxidation product of 5-methylcytosine (5mC) has led to models and experimental data in which the hypermethylation and 5mC oxidation pathways seem to be connected. Key discoveries in this setting include the findings that several genes coding for proteins involved in the 5mC oxidation reaction are mutated in human tumors, and that a broad loss of 5hmC occurs across many types of cancer. In this review, we will summarize current knowledge and discuss models of the potential roles of 5hmC in human cancer biology.

Indexed as

DNA Methylation5-MethylcytosineCytosineDNA, NeoplasmHumansNeoplasmsOxidation-Reduction5-hydroxymethylcytosine5-MethylcytosineCytosineDNA, Neoplasm

Identifiers

PMID24816989
PMCPMC4090033
OpenAlexW1967184012

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.