Evidence map›Paper›PMID 24816602›Full record

ArticleJournal of bacteriology2014

HupB, a nucleoid-associated protein of Mycobacterium tuberculosis, is modified by serine/threonine protein kinases in vivo.

Meetu Gupta, Andaleeb Sajid, Kirti Sharma, Soumitra Ghosh, Gunjan Arora, Ramandeep Singh, Valakunja Nagaraja, Vibha Tandon, Yogendra Singh

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 74 citations in OpenAlex.

  1. Protein kinase F regulates the virulence ofInfection and immunity · 2026
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  6. Protein kinase F regulates the virulence ofbioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
  9. Journal of clinical tuberculosis and other mycobacterial diseases · 2024
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Types and functions of heterogeneity in mycobacteria.Nature reviews. Microbiology · 2022
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Meetu GuptaCSIR-Institute of Genomics and Integrative Biology, Delhi, India.
Andaleeb SajidCSIR-Institute of Genomics and Integrative Biology, Delhi, India.
Kirti SharmaDepartment of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.
Soumitra GhoshDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Gunjan AroraCSIR-Institute of Genomics and Integrative Biology, Delhi, India.
Ramandeep SinghVaccine and Infectious Disease Research Centre, Translational Health Science and Technology Institute, Haryana, India.
Valakunja NagarajaDepartment of Microbiology and Cell Biology, Indian Institute of Science, Bangalore, India.
Vibha TandonDepartment of Chemistry, University of Delhi, Delhi, India.
Yogendra SinghCSIR-Institute of Genomics and Integrative Biology, Delhi, India ysingh@igib.res.in.
Institute of Genomics and Integrative Biology · INIndian Institute of Science Bangalore · INMax Planck Institute of Biochemistry · DETranslational Health Science and Technology Institute · INUniversity of Delhi · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

HU, a widely conserved bacterial histone-like protein, regulates many genes, including those involved in stress response and virulence. Whereas ample data are available on HU-DNA communication, the knowledge on how HU perceives a signal and transmit it to DNA remains limited. In this study, we identify HupB, the HU homolog of the human pathogen Mycobacterium tuberculosis, as a component of serine/threonine protein kinase (STPK) signaling. HupB is extracted in its native state from the exponentially growing cells of M. tuberculosis H37Ra and is shown to be phosphorylated on both serine and threonine residues. The STPKs capable of modifying HupB are determined in vitro and the residues modified by the STPKs are identified for both in vivo and the in vitro proteins through mass spectrometry. Of the identified phosphosites, Thr(65) and Thr(74) in the DNA-embracing β-strand of the N-terminal domain of HupB (N-HupB) are shown to be crucial for its interaction with DNA. In addition, Arg(55) is also identified as an important residue for N-HupB-DNA interaction. N-HupB is shown to have a diminished interaction with DNA after phosphorylation. Furthermore, hupB is shown to be maximally expressed during the stationary phase in M. tuberculosis H37Ra, while HupB kinases were found to be constitutively expressed (PknE and PknF) or most abundant during the exponential phase (PknB). In conclusion, HupB, a DNA-binding protein, with an ability to modulate chromatin structure is proposed to work in a growth-phase-dependent manner through its phosphorylation carried out by the mycobacterial STPKs.

Indexed as

Amino Acid SequenceBacterial ProteinsCloning, MolecularDNA, BacterialGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicHistonesHumansMolecular Sequence DataMycobacterium tuberculosisPhosphorylationProtein BindingProtein Serine-Threonine KinasesBacterial ProteinsDNA, BacterialHistonesHupB protein, Mycobacterium tuberculosisProtein Serine-Threonine Kinases

Identifiers

PMID24816602
PMCPMC4097597
OpenAlexW2167160669

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.