Evidence map›Paper›PMID 24814792›Full record

ArticleApplied and environmental microbiology2014

Physiological and transcriptional responses of anaerobic chemostat cultures of Saccharomyces cerevisiae subjected to diurnal temperature cycles.

Marit Hebly, Dick de Ridder, Erik A F de Hulster, Pilar de la Torre Cortes, Jack T Pronk, Pascale Daran-Lapujade

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Marit HeblyIndustrial Microbiology Section, Department of Biotechnology, Delft University of Technology, Delft, The Netherlands Kluyver Centre for Genomics of Industrial Fermentation, Delft, The Netherlands Netherlands Consortium for Systems Biology, Amsterdam, The Netherlands.
Dick de RidderKluyver Centre for Genomics of Industrial Fermentation, Delft, The Netherlands Delft Bioinformatics Lab, Department of Intelligent Systems, Delft University of Technology, Delft, The Netherlands.
Erik A F de HulsterIndustrial Microbiology Section, Department of Biotechnology, Delft University of Technology, Delft, The Netherlands Kluyver Centre for Genomics of Industrial Fermentation, Delft, The Netherlands.
Pilar de la Torre CortesIndustrial Microbiology Section, Department of Biotechnology, Delft University of Technology, Delft, The Netherlands Kluyver Centre for Genomics of Industrial Fermentation, Delft, The Netherlands.
Jack T PronkIndustrial Microbiology Section, Department of Biotechnology, Delft University of Technology, Delft, The Netherlands Kluyver Centre for Genomics of Industrial Fermentation, Delft, The Netherlands Netherlands Consortium for Systems Biology, Amsterdam, The Netherlands.
Pascale Daran-LapujadeIndustrial Microbiology Section, Department of Biotechnology, Delft University of Technology, Delft, The Netherlands Kluyver Centre for Genomics of Industrial Fermentation, Delft, The Netherlands Netherlands Consortium for Systems Biology, Amsterdam, The Netherlands P.A.S.Daran-Lapujade@tudelft.nl.
Cancer Genomics Centre · NLCentre for Medical Systems Biology · NLDelft University of Technology · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diurnal temperature cycling is an intrinsic characteristic of many exposed microbial ecosystems. However, its influence on yeast physiology and the yeast transcriptome has not been studied in detail. In this study, 24-h sinusoidal temperature cycles, oscillating between 12°C and 30°C, were imposed on anaerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae. After three diurnal temperature cycles (DTC), concentrations of glucose and extracellular metabolites as well as CO2 production rates showed regular, reproducible circadian rhythms. DTC also led to waves of transcriptional activation and repression, which involved one-sixth of the yeast genome. A substantial fraction of these DTC-responsive genes appeared to respond primarily to changes in the glucose concentration. Elimination of known glucose-responsive genes revealed an overrepresentation of previously identified temperature-responsive genes as well as genes involved in the cell cycle and de novo purine biosynthesis. In-depth analysis demonstrated that DTC led to a partial synchronization of the cell cycle of the yeast populations in chemostat cultures, which was lost upon release from DTC. Comparison of DTC results with data from steady-state cultures showed that the 24-h DTC was sufficiently slow to allow S. cerevisiae chemostat cultures to acclimate their transcriptome and physiology at the DTC temperature maximum and to approach acclimation at the DTC temperature minimum. Furthermore, this comparison and literature data on growth rate-dependent cell cycle phase distribution indicated that cell cycle synchronization was most likely an effect of imposed fluctuations of the relative growth rate (μ/μmax) rather than a direct effect of temperature.

Indexed as

TemperatureTranscriptomeAdaptation, PhysiologicalAnaerobiosisCulture MediaEcosystemFlow CytometryGene Expression ProfilingGlucosePrincipal Component AnalysisSaccharomyces cerevisiaeCulture MediaGlucose

Identifiers

PMID24814792
PMCPMC4068694
OpenAlexW2107737183

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.