Evidence map›Paper›PMID 24814778›Full record

ArticleApplied and environmental microbiology2014

A tailored galK counterselection system for efficient markerless gene deletion and chromosomal tagging in Magnetospirillum gryphiswaldense.

Oliver Raschdorf, Jürgen M Plitzko, Dirk Schüler, Frank D Müller

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Oliver RaschdorfLudwig Maximilian University Munich, Department Biology I, Biocenter, Planegg-Martinsried, Germany Max Planck Institute of Biochemistry, Department of Molecular Structural Biology, Planegg-Martinsried, Germany.
Jürgen M PlitzkoMax Planck Institute of Biochemistry, Department of Molecular Structural Biology, Planegg-Martinsried, Germany Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, the Netherlands.
Dirk SchülerLudwig Maximilian University Munich, Department Biology I, Biocenter, Planegg-Martinsried, Germany.
Frank D MüllerLudwig Maximilian University Munich, Department Biology I, Biocenter, Planegg-Martinsried, Germany Frank.Mueller@biologie.uni-muenchen.de.
Ludwig-Maximilians-Universität München · DEMax Planck Institute of Biochemistry · DEUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Magnetotactic bacteria have emerged as excellent model systems to study bacterial cell biology, biomineralization, vesicle formation, and protein targeting because of their ability to synthesize single-domain magnetite crystals within unique organelles (magnetosomes). However, only few species are amenable to genetic manipulation, and the limited methods for site-specific mutagenesis are tedious and time-consuming. Here, we report the adaptation and application of a fast and convenient technique for markerless chromosomal manipulation of Magnetospirillum gryphiswaldense using a single antibiotic resistance cassette and galK-based counterselection for marker recycling. We demonstrate the potential of this technique by genomic excision of the phbCAB operon, encoding enzymes for polyhydroxyalkanoate (PHA) synthesis, followed by chromosomal fusion of magnetosome-associated proteins to fluorescent proteins. Because of the absence of interfering PHA particles, these engineered strains are particularly suitable for microscopic analyses of cell biology and magnetosome biosynthesis.

Indexed as

Gene DeletionGenes, BacterialChromosomes, BacterialColony Count, MicrobialCulture MediaDNA, BacterialDrug Resistance, BacterialEscherichia coliGenomicsMagnetosomesMagnetospirillumMicroscopy, Electron, TransmissionMutagenesis, Site-DirectedOperonPolyhydroxyalkanoatesCulture MediaDNA, BacterialPolyhydroxyalkanoates

Identifiers

PMID24814778
PMCPMC4068681
OpenAlexW2133074091

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.