Evidence map›Paper›PMID 24814484›Full record

ArticleCell metabolism2014

Inactivation of yeast Isw2 chromatin remodeling enzyme mimics longevity effect of calorie restriction via induction of genotoxic stress response.

Weiwei Dang, George L Sutphin, Jean A Dorsey, Gabriel L Otte, Kajia Cao, Rocco M Perry, Jennifer J Wanat, Dimitra Saviolaki, Christopher J Murakami, Scott Tsuchiyama and 8 more

Abstract read
In one paragraph

Article in Cell metabolism, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Engineering robustSynthetic and systems biotechnology · 2025
    Article
  5. Article
  6. Comparative Genomic Analysis Reveals Key Changes in the Genome ofInternational journal of molecular sciences · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Genomic Instability and Epigenetic Changes during Aging.International journal of molecular sciences · 2023
    Review
  11. Review
  12. Review
  13. Epigenetics of Aging and Aging-Associated Diseases.International journal of molecular sciences · 2021
    Review
  14. Rational gRNA design based on transcription factor binding data.Synthetic biology (Oxford, England) · 2021
    Article
  15. New Insights into the Role of Histone Changes in Aging.International journal of molecular sciences · 2020
    Review
  16. Article
  17. Review
  18. Review
  19. The ageing epigenome and its rejuvenation.Nature reviews. Molecular cell biology · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Weiwei DangDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA 19104, USA; Epigenetics Program, University of Pennsylvania, Philadelphia, PA 19104, USA.
George L SutphinDepartment of Pathology, University of Washington, Seattle, WA 98195, USA.
Jean A DorseyDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA 19104, USA; Epigenetics Program, University of Pennsylvania, Philadelphia, PA 19104, USA.
Gabriel L OtteDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA 19104, USA; Epigenetics Program, University of Pennsylvania, Philadelphia, PA 19104, USA.
Kajia CaoDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA 19104, USA; Epigenetics Program, University of Pennsylvania, Philadelphia, PA 19104, USA.
Rocco M PerryDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA 19104, USA; Epigenetics Program, University of Pennsylvania, Philadelphia, PA 19104, USA.
Jennifer J WanatDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Dimitra SaviolakiThe Wistar Institute, Philadelphia, PA 19104, USA.
Christopher J MurakamiDepartment of Pathology, University of Washington, Seattle, WA 98195, USA.
Scott TsuchiyamaBuck Institute for Research on Aging, Novato, CA 94945, USA.
Brett RobisonBuck Institute for Research on Aging, Novato, CA 94945, USA.
Brian D GregoryDepartment of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA.
Michiel VermeulenDepartment Molecular Cancer Research, University Medical Center Utrecht, 3584 CG Utrecht, The Netherlands.
Ramin ShiekhattarThe Wistar Institute, Philadelphia, PA 19104, USA.
F Brad JohnsonDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Brian K KennedyThe Wistar Institute, Philadelphia, PA 19104, USA.
Matt KaeberleinDepartment of Pathology, University of Washington, Seattle, WA 98195, USA.
Shelley L BergerDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA 19104, USA; Epigenetics Program, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address: bergers@upenn.edu.

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
STRUCTURAL BASIS FOR EPIGENETICS IN AGING AND LONGEVITYP01AG031862 · NIA · WISTAR INSTITUTE · PI BERGER, SHELLEY L · 2008 to 2022
$28.3M
GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
System approaches to determine mechanisms underlying yeast replicative agingR01AG043080 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI KENNEDY, BRIAN K · 2012 to 2016
$3.0M
Defining the Mechanisms of genotype-dependent responses to caloric restrictionR01AG039390 · NIA · UNIVERSITY OF WASHINGTON · PI KAEBERLEIN, MATT · 2011 to 2015
$1.5M
Regulation of yeast cellular aging through chromatin and novel pathwaysR00AG037646 · NIA · BAYLOR COLLEGE OF MEDICINE · PI DANG, WEIWEI · 2013 to 2015
$740k
Regulation of yeast cellular aging through chromatin and novel pathwaysK99AG037646 · NIA · UNIVERSITY OF PENNSYLVANIA · PI DANG, WEIWEI · 2010 to 2011
$193k
NCI NIH HHS P30 CA010815NIA NIH HHS K99 AG037646NIA NIH HHS K99AG037646NIA NIH HHS P01 AG031862NIA NIH HHS P01AG031862NIA NIH HHS R00 AG037646NIA NIH HHS R01 AG039390NIA NIH HHS R01AG039390NIA NIH HHS R01 AG043080NIA NIH HHS R01AG043080NIA NIH HHS T32 AG000057NIA NIH HHS T32AG000057
6 · The paper itself

Abstract

ATP-dependent chromatin remodeling is involved in all DNA transactions and is linked to numerous human diseases. We explored functions of chromatin remodelers during cellular aging. Deletion of ISW2, or mutations inactivating the Isw2 enzyme complex, extends yeast replicative lifespan. This extension by ISW2 deletion is epistatic to the longevity effect of calorie restriction (CR), and this mechanism is distinct from suppression of TOR signaling by CR. Transcriptome analysis indicates that isw2Δ partially mimics an upregulated stress response in CR cells. In particular, isw2Δ cells show an increased response to genotoxic stresses, and the DNA repair enzyme Rad51 is important for isw2Δ-mediated longevity. We show that lifespan is also extended in C. elegans by reducing levels of athp-2, a putative ortholog of Itc1/ACF1, a critical subunit of the enzyme complex. Our findings demonstrate that the ISWI class of ATP-dependent chromatin remodeling complexes plays a conserved role during aging and in CR.

Indexed as

Adenosine TriphosphatasesAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCaloric RestrictionCellular SenescenceChromatin Assembly and DisassemblyDNA DamageDNA RepairGene Expression ProfilingGene Expression Regulation, FungalGene Knockout TechniquesLongevityPeroxidasesRad51 RecombinaseSaccharomyces cerevisiaeAdenosine TriphosphatasesATHP-2 protein, C elegansCaenorhabditis elegans ProteinsISWI proteinPeroxidasesPRX1 protein, S cerevisiaeRad51 RecombinaseSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID24814484
PMCPMC4106248

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.