Evidence map›Paper›PMID 24813624›Full record

ArticleNature methods2014

Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.

Kunio Hirata, Kyoko Shinzawa-Itoh, Naomine Yano, Shuhei Takemura, Koji Kato, Miki Hatanaka, Kazumasa Muramoto, Takako Kawahara, Tomitake Tsukihara, Eiki Yamashita and 13 more

Abstract read
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In one paragraph

Article in Nature methods, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed.

  1. Article
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  5. Review
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  7. Macromolecular crystallography at SPring-8 and SACLA.Journal of synchrotron radiation · 2025
    Article
  8. Structural and functional mechanisms of cytochrome c oxidase.Journal of inorganic biochemistry · 2025
    Review
  9. Similarity between oxygen evolution in photosystem II and oxygen reduction in cytochrome c oxidase via proton coupled electron transfers. A unified view of the oxygenic life from four electron oxidation-reduction reactions.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2024
    Article
  10. Identifying and avoiding radiation damage in macromolecular crystallography.Acta crystallographica. Section D, Structural biology · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
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  19. Article
  20. Room-temperature serial synchrotron crystallography of the human phosphatase PTP1B.Acta crystallographica. Section F, Structural biology communications · 2023
    Article

65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Kunio Hirata1] RIKEN SPring-8 Center, Sayo, Japan. [2] Japan Science and Technology Agency (JST), Core Research for Evolutional Science and Technology (CREST), Kawaguchi, Japan. [3].
Kyoko Shinzawa-Itoh1] Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan. [2].
Naomine Yano1] Japan Science and Technology Agency (JST), Core Research for Evolutional Science and Technology (CREST), Kawaguchi, Japan. [2] Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan.
Shuhei TakemuraPicobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan.
Koji Kato1] Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan. [2].
Miki HatanakaPicobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan.
Kazumasa MuramotoPicobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan.
Takako KawaharaPicobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan.
Tomitake Tsukihara1] Japan Science and Technology Agency (JST), Core Research for Evolutional Science and Technology (CREST), Kawaguchi, Japan. [2] Picobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan. [3] Institute for Protein Research, Osaka University, Suita, Japan.
Eiki YamashitaInstitute for Protein Research, Osaka University, Suita, Japan.
Kensuke TonoJapan Synchrotron Radiation Research Institute, Sayo, Japan.
Go UenoRIKEN SPring-8 Center, Sayo, Japan.
Takaaki HikimaRIKEN SPring-8 Center, Sayo, Japan.
Hironori MurakamiRIKEN SPring-8 Center, Sayo, Japan.
Yuichi InubushiRIKEN SPring-8 Center, Sayo, Japan.
Makina YabashiRIKEN SPring-8 Center, Sayo, Japan.
Tetsuya IshikawaRIKEN SPring-8 Center, Sayo, Japan.
Masaki YamamotoRIKEN SPring-8 Center, Sayo, Japan.
Takashi OguraPicobiology Institute, Graduate School of Life Science, University of Hyogo, Sayo, Japan.
Hiroshi SugimotoRIKEN SPring-8 Center, Sayo, Japan.
Jian-Ren ShenPhotosynthesis Research Center, Graduate School of Natural Science and Technology, Okayama University, Okayama, Japan.
Shinya YoshikawaPicobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Japan.
Hideo AgoRIKEN SPring-8 Center, Sayo, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report a method of femtosecond crystallography for solving radiation damage-free crystal structures of large proteins at sub-angstrom spatial resolution, using a large single crystal and the femtosecond pulses of an X-ray free-electron laser (XFEL). We demonstrated the performance of the method by determining a 1.9-Å radiation damage-free structure of bovine cytochrome c oxidase, a large (420-kDa), highly radiation-sensitive membrane protein.

Indexed as

LasersAnimalsCattleCrystallographyElectron Transport Complex IVElectron Transport Complex IV

Identifiers

PMID24813624

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.