Evidence map›Paper›PMID 24812557›Full record

ArticleGastroenterology research and practice2014

The CIMP Phenotype in BRAF Mutant Serrated Polyps from a Prospective Colonoscopy Patient Cohort.

Winnie C Fernando, Mariska S Miranda, Daniel L Worthley, Kazutomo Togashi, Dianne J Watters, Barbara A Leggett, Kevin J Spring

Open access · goldAbstract read
In one paragraph

Article in Gastroenterology research and practice, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Review
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  4. Transcription factor expression repertoire basis for epigenetic and transcriptional subtypes of colorectal cancers.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  14. An update on the morphology and molecular pathology of serrated colorectal polyps and associated carcinomas.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2019
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. How theGastroenterology research and practice · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Winnie C FernandoConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, 300 Herston Road, Brisbane, QLD 4029, Australia ; School of Biomolecular and Physical Sciences, Griffith University, Brisbane, QLD 4111, Australia.
Mariska S MirandaConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, 300 Herston Road, Brisbane, QLD 4029, Australia ; The School of Medicine, The University of Queensland, Brisbane, QLD 4006, Australia.
Daniel L WorthleyConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, 300 Herston Road, Brisbane, QLD 4029, Australia.
Kazutomo TogashiDepartment of Coloproctology, Aizu Medical Center, Fukushima Medical University, Fukushima 960-1295, Japan.
Dianne J WattersSchool of Biomolecular and Physical Sciences and Eskitis Institute for Drug Discovery, Griffith University, Brisbane, QLD 4111, Australia.
Barbara A LeggettConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, 300 Herston Road, Brisbane, QLD 4029, Australia ; The School of Medicine, The University of Queensland, Brisbane, QLD 4006, Australia ; Department of Gastroenterology and Hepatology, The Royal Brisbane and Women's Hospital, Brisbane, QLD 4029, Australia.
Kevin J SpringConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, 300 Herston Road, Brisbane, QLD 4029, Australia ; School of Biomolecular and Physical Sciences, Griffith University, Brisbane, QLD 4111, Australia ; Ingham Institute, Liverpool Hospital and Liverpool Clinical School, University of Western Sydney, Sydney, NSW 2170, Australia.
QIMR Berghofer Medical Research Institute · AUUniversity of Queensland · AUFukushima Medical University · JPGriffith University · AUIngham Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Colorectal cancers arising via the serrated pathway are often associated with BRAF V600E mutation, CpG island methylator phenotype (CIMP), and microsatellite instability. Previous studies have shown a strong association between BRAF V600E mutation and serrated polyps. This study aims to evaluate CIMP status of all the serrated polyp subtypes and its association with functionally important genes such as MLH1, p16, and IGFBP7. CIMP status and methylation were evaluated using the real-time based MethyLight assay in 154 serrated polyps and 63 conventional adenomas. Results showed that CIMP-high serrated polyps were strongly associated with BRAF mutation and proximal colon. CIMP-high was uncommon in conventional adenomas (1.59%), occurred in 8.25% of hyperplastic polyps (HPs), and became common in sessile serrated adenomas (SSAs) (51.43%). MLH1 methylation was mainly observed in the proximal colon and was significantly associated with BRAF mutation and CIMP-high. The number of samples methylated for p16 and IGFBP7 was the highest in SSAs. The methylation panel we used to detect CIMP is highly specific for CIMP-high cancers. With this panel, we demonstrate that CIMP-high is much more common in SSAs than HPs. This suggests that CIMP-high correlates with increased risk of malignant transformation which was also observed in methylation of functionally important genes.

Identifiers

PMID24812557
PMCPMC4000649
OpenAlexW1978461622

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.