Evidence map›Paper›PMID 24812252›Full record

ArticleAnnals of botany2014

Phylogenetic analyses provide the first insights into the evolution of OVATE family proteins in land plants.

Di Liu, Wei Sun, Yaowu Yuan, Ning Zhang, Alice Hayward, Yongliang Liu, Ying Wang

Open access · bronzeAbstract read
In one paragraph

Article in Annals of botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 85 citations in OpenAlex.

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  10. International journal of molecular sciences · 2024
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  15. The CsHEC1-CsOVATE module contributes to fruit neck length variation via modulating auxin biosynthesis in cucumber.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Review
  17. A cryptic variation in a member of the Ovate Family Proteins is underlying the melon fruit shape QTL fsqs8.1.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

7 authors at 6 institutions in 2 countries.

Di LiuKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China University of Chinese Academy of Sciences, Beijing 100049, China.
Wei SunInstitute of Chinese Materia Medica, Chinese Academy of Chinese Medical Science, Beijing 100700, China Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Yaowu YuanDepartment of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT 06269, USA.
Ning ZhangDepartment of Biology, the Huck Institute of the Life Sciences, Pennsylvania State University, University Park, PA 16802, USA.
Alice HaywardKey Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China.
Yongliang LiuKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China University of Chinese Academy of Sciences, Beijing 100049, China.
Ying WangKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China yingwang@wbgcas.cn.
Wuhan Botanical Garden · CNBeijing Botanical Garden · CNChina Academy of Chinese Medical Sciences · CNChinese Academy of Sciences · CNPennsylvania State University · USUniversity of Connecticut · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

aimsThe OVATE gene encodes a nuclear-localized regulatory protein belonging to a distinct family of plant-specific proteins known as the OVATE family proteins (OFPs). OVATE was first identified as a key regulator of fruit shape in tomato, with nonsense mutants displaying pear-shaped fruits. However, the role of OFPs in plant development has been poorly characterized.

methodsPublic databases were searched and a total of 265 putative OVATE protein sequences were identified from 13 sequenced plant genomes that represent the major evolutionary lineages of land plants. A phylogenetic analysis was conducted based on the alignment of the conserved OVATE domain from these 13 selected plant genomes. The expression patterns of tomato SlOFP genes were analysed via quantitative real-time PCR. The pattern of OVATE gene duplication resulting in the expansion of the gene family was determined in arabidopsis, rice and tomato. KEY

resultsGenes for OFPs were found to be present in all the sampled land plant genomes, including the early-diverged lineages, mosses and lycophytes. Phylogenetic analysis based on the amino acid sequences of the conserved OVATE domain defined 11 sub-groups of OFPs in angiosperms. Different evolutionary mechanisms are proposed for OVATE family evolution, namely conserved evolution and divergent expansion. Characterization of the AtOFP family in arabidopsis, the OsOFP family in rice and the SlOFP family in tomato provided further details regarding the evolutionary framework and revealed a major contribution of tandem and segmental duplications towards expansion of the OVATE gene family.

conclusionsThis first genome-wide survey on OFPs provides new insights into the evolution of the OVATE protein family and establishes a solid base for future functional genomics studies on this important but poorly characterized regulatory protein family in plants.

Indexed as

Evolution, MolecularPhylogenyAmino Acid SequenceArabidopsisBase SequenceEmbryophytaGene DuplicationOryzaPlant ProteinsReal-Time Polymerase Chain ReactionSequence AlignmentSolanum lycopersicumPlant ProteinsangiospermArabidopsis thalianaland plantsOFPOryza sativaOVATE family proteinsphylogenetic analysessegmental duplicationSolanum lycopersicumtandem duplication

Identifiers

PMID24812252
PMCPMC4030818
OpenAlexW2140004721

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.