Evidence map›Paper›PMID 24809345›Full record

ArticlePLoS genetics2014

Fine tuning of the UPR by the ubiquitin ligases Siah1/2.

Marzia Scortegagna, Hyungsoo Kim, Jian-Liang Li, Hang Yao, Laurence M Brill, Jaeseok Han, Eric Lau, David Bowtell, Gabriel Haddad, Randal J Kaufman and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
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  18. Crosstalk Between Mammalian Autophagy and the Ubiquitin-Proteasome System.Frontiers in cell and developmental biology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Marzia ScortegagnaTumor Initiation and Maintenance Program, Cancer Center, Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
Hyungsoo KimTumor Initiation and Maintenance Program, Cancer Center, Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
Jian-Liang LiProteomics Facility, Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
Hang YaoDepartment of Pediatrics, University of California, San Diego, La Jolla, California, United States of America.
Laurence M BrillProteomics Facility, Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
Jaeseok HanDegenerative Diseases Program, Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
Eric LauTumor Initiation and Maintenance Program, Cancer Center, Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
David BowtellDepartment of Biochemistry and Molecular Biology, The University of Melbourne, Parkville, Victoria, Australia; Department of Pathology, The University of Melbourne, Parkville, Victoria, Australia; Sir Peter MacCallum Department of Oncology, The University of Melbourne, Parkville, Victoria, Australia; Cancer Genomics and Genetics, Peter MacCallum Cancer Centre, East Melbourne, Victoria, Australia.
Gabriel HaddadDepartment of Pediatrics, University of California, San Diego, La Jolla, California, United States of America.
Randal J KaufmanDegenerative Diseases Program, Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
Ze'ev A RonaiTumor Initiation and Maintenance Program, Cancer Center, Sanford-Burnham Medical Research Institute, La Jolla, California, United States of America.
Sanford Burnham Prebys Medical Discovery Institute · USUniversity of California, San Diego · USPeter MacCallum Cancer Centre · AU

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI Michael Jackson · 1985 to 2026
$107.2M
Tumor Assessment CoreP01CA128814 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI SMITH, JEFFREY W · 2009 to 2020
$19.1M
Systems Biology CoreP01HL098053 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI POWELL, FRANK L. · 2010 to 2014
$10.2M
Regulation of Factor VIII SecretionR01HL052173 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KAUFMAN, RANDAL J. · 1995 to 2014
$6.5M
Role of the Unfolded Protein Response in Beta CellR37DK042394 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KAUFMAN, RANDAL J. · 2007 to 2016
$4.9M
ATF2 in melanoma development and progressionR01CA099961 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI RONAI, ZEEV A. · 2003 to 2012
$3.6M
Regulation of ER stress-induced cell deathR01DK088227 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KAUFMAN, RANDAL J. · 2010 to 2014
$3.1M
NCI NIH HHS NIH/NCI R01 CA099961NCI NIH HHS NIH/NCI R01 CA128814NCI NIH HHS P01 CA128814NCI NIH HHS P30 CA030199NCI NIH HHS R01 CA099961NHLBI NIH HHS P01 HL098053NHLBI NIH HHS R01 HL052173NIDDK NIH HHS R01 DK088227NIDDK NIH HHS R37 DK042394PHS HHS NIH/NHLBI P01 HL098053PHS HHS NIH/NHLBI R01 HL052173PHS HHS NIH/NIDDK R01DK088227PHS HHS NIH/NIDDK R37 DK042394
6 · The paper itself

Abstract

The endoplasmic reticulum (ER) responds to changes in intracellular homeostasis through activation of the unfolded protein response (UPR). Yet, it is not known how UPR-signaling coordinates adaptation versus cell death. Previous studies suggested that signaling through PERK/ATF4 is required for cell death. We show that high levels of ER stress (i.e., ischemia-like conditions) induce transcription of the ubiquitin ligases Siah1/2 through the UPR transducers PERK/ATF4 and IRE1/sXBP1. In turn, Siah1/2 attenuates proline hydroxylation of ATF4, resulting in its stabilization, thereby augmenting ER stress output. Conversely, ATF4 activation is reduced upon Siah1/2 KD in cultured cells, which attenuates ER stress-induced cell death. Notably, Siah1a(+/-)::Siah2(-/-) mice subjected to neuronal ischemia exhibited smaller infarct volume and were protected from ischemia-induced death, compared with the wild type (WT) mice. In all, Siah1/2 constitutes an obligatory fine-tuning mechanism that predisposes cells to death under severe ER stress conditions.

Indexed as

Unfolded Protein ResponseAnimalsCells, CulturedCHO CellsCricetinaeCricetulusEndoplasmic ReticulumEnzyme ActivationHumansIsoenzymesMiceReal-Time Polymerase Chain ReactionRNA, MessengerStress, PhysiologicalTranscription, GeneticUbiquitin-Protein LigasesIsoenzymesRNA, MessengerSiah2 protein, mouseUbiquitin-Protein Ligases

Identifiers

PMID24809345
PMCPMC4014425
OpenAlexW2001532488

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.