Evidence map›Paper›PMID 24809025›Full record

ArticleFrontiers in cellular and infection microbiology2014

Low occurrence of Pseudomonas aeruginosa in agricultural soils with and without organic amendment.

Amélie Deredjian, Céline Colinon, Edmond Hien, Elisabeth Brothier, Benjamin Youenou, Benoit Cournoyer, Samuel Dequiedt, Alain Hartmann, Claudy Jolivet, Sabine Houot and 3 more

Abstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Mechanisms of thermoregulation inJournal of bacteriology · 2026
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  2. Molecular Mechanisms Underlying the Pathogenicity ofMedicina (Kaunas, Lithuania) · 2026
    Review
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  5. Evaluating the In Vivo Virulence of EnvironmentalAntibiotics (Basel, Switzerland) · 2023
    Article
  6. Molecular Detection of Antibiotic-Resistant Genes inInternational journal of microbiology · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. The plant pathogeneLife · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Amélie DeredjianCNRS, Ecole Nationale Vétérinaire de Lyon, and Université Lyon 1, UMR 5557 Ecologie Microbienne, Université de Lyon Villeurbanne, France.
Céline ColinonCNRS, Ecole Nationale Vétérinaire de Lyon, and Université Lyon 1, UMR 5557 Ecologie Microbienne, Université de Lyon Villeurbanne, France.
Edmond HienUMR Ecosol, IRD-Université de Ouagadougou, UFR/SVT Ouagadougou, Burkina Faso.
Elisabeth BrothierCNRS, Ecole Nationale Vétérinaire de Lyon, and Université Lyon 1, UMR 5557 Ecologie Microbienne, Université de Lyon Villeurbanne, France.
Benjamin YouenouCNRS, Ecole Nationale Vétérinaire de Lyon, and Université Lyon 1, UMR 5557 Ecologie Microbienne, Université de Lyon Villeurbanne, France.
Benoit CournoyerCNRS, Ecole Nationale Vétérinaire de Lyon, and Université Lyon 1, UMR 5557 Ecologie Microbienne, Université de Lyon Villeurbanne, France.
Samuel DequiedtPlateforme GenoSol, INRA-Université Bourgogne, AgroSup, UMR1347 Agroécologie Dijon, France.
Alain HartmannINRA-Université Bourgogne, AgroSup, UMR1347 Agroécologie Dijon, France.
Claudy JolivetINRA, US 1106 InfoSol Orléans, France.
Sabine HouotINRA, UMR 1091 Environnement et Grandes Cultures Thiverval-Grignon, France.
Lionel RanjardPlateforme GenoSol, INRA-Université Bourgogne, AgroSup, UMR1347 Agroécologie Dijon, France.
Nicolas P A SabyINRA, US 1106 InfoSol Orléans, France.
Sylvie NazaretCNRS, Ecole Nationale Vétérinaire de Lyon, and Université Lyon 1, UMR 5557 Ecologie Microbienne, Université de Lyon Villeurbanne, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The occurrence of Pseudomonas aeruginosa was monitored at a broad spatial scale in French agricultural soils, from various soil types and under various land uses to evaluate the ability of soil to be a natural habitat for that species. To appreciate the impact of agricultural practices on the potential dispersion of P. aeruginosa, we further investigated the impact of organic amendment at experimental sites in France and Burkina Faso. A real-time quantitative PCR (qPCR) approach was used to analyze a set of 380 samples selected within the French RMQS ("Réseau de Mesures de la Qualité des Sols") soil library. In parallel, a culture-dependent approach was tested on a subset of samples. The results showed that P. aeruginosa was very rarely detected suggesting a sporadic presence of this bacterium in soils from France and Burkina Faso, whatever the structural and physico-chemical characteristics or climate. When we analyzed the impact of organic amendment on the prevalence of P. aeruginosa, we found that even if it was detectable in various manures (at levels from 10(3) to 10(5) CFU or DNA targets (g drywt)(-1) of sample), it was hardly ever detected in the corresponding soils, which raises questions about its survival. The only case reports were from a vineyard soil amended with a compost of mushroom manure in Burgundy, and a few samples from two fields amended with raw urban wastes in the sub-urban area of Ouagadougou, Burkina Faso. In these soils the levels of culturable cells were below 10 CFU (g drywt)(-1).

Indexed as

AgriculturePseudomonas aeruginosaSoil MicrobiologyBurkina FasoFranceMolecular TypingSoilSoilcultivationorganic amendmentPseudomonas aeruginosaqPCRsoil

Identifiers

PMID24809025
PMCPMC4010769

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.