Evidence map›Paper›PMID 24808134›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Evolution of the primate trypanolytic factor APOL1.

Russell Thomson, Giulio Genovese, Chelsea Canon, Daniella Kovacsics, Matthew K Higgins, Mark Carrington, Cheryl A Winkler, Jeffrey Kopp, Charles Rotimi, Adebowale Adeyemo and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 152 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
152citing papers in PubMed, 2 pooled it
16.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

152 citing papers in PubMed, 2 syntheses or guidelines pooled it, 218 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Germline-targeted baboon apolipoprotein L-1 protects mice against African trypanosomes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  11. Molecular Mechanisms of APOL1-Associated Kidney Disease.International journal of molecular sciences · 2026
    Review
  12. Review
  13. A novelRenal failure · 2025
    Article
  14. Article
  15. Missense Variants in Nutrition-Related Genes: A Computational Study.International journal of molecular sciences · 2025
    Article
  16. De novo rates of aProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Article
  18. Article
  19. Review
  20. Article

92 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 11 institutions in 4 countries.

Russell ThomsonDepartment of Microbiology, New York University School of Medicine, New York, NY 10016;
Giulio GenoveseRenal Division andBroad Institute of Harvard and Massachusetts Institute of Technology, Boston, MA 02215;
Chelsea CanonDepartment of Microbiology, New York University School of Medicine, New York, NY 10016;Department of Biological Sciences, Hunter College at City University of New York, New York, NY 10065;
Daniella KovacsicsDepartment of Microbiology, New York University School of Medicine, New York, NY 10016;Department of Biological Sciences, Hunter College at City University of New York, New York, NY 10065;
Matthew K HigginsDepartment Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom;
Mark CarringtonDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1QW, United Kingdom;
Cheryl A WinklerBasic Research Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Leidos Biomedical Research, Inc., Frederick National Laboratory, Frederick, MD 21702;
Jeffrey KoppKidney Disease Section, National Institutes of Health, Bethesda, MD 20892;
Charles RotimiCenter for Research on Genomics and Global Health, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892;
Adebowale AdeyemoCenter for Research on Genomics and Global Health, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892;
Ayo DoumateyCenter for Research on Genomics and Global Health, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892;
George AyodoKenya Medical Research Institute, Kisumu, Kenya; andDivision of Pediatrics, University of Minnesota Medical School, Minneapolis, MN 55454.
Seth L AlperRenal Division and.
Martin R PollakRenal Division andBroad Institute of Harvard and Massachusetts Institute of Technology, Boston, MA 02215;
David J FriedmanRenal Division andCenter for Vascular Biology Research, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215; dfriedma@bidmc.harvard.edu raper@genectr.hunter.cuny.edu.
Jayne RaperDepartment of Microbiology, New York University School of Medicine, New York, NY 10016;Department of Biological Sciences, Hunter College at City University of New York, New York, NY 10065; dfriedma@bidmc.harvard.edu raper@genectr.hunter.cuny.edu.
National Institutes of Health · USMetabolism and Renal Physiology · FRNational Human Genome Research Institute · USNew York University · USBeth Israel Deaconess Medical Center · USBroad Institute · USCity University of New York · USHunter College · USKenya Medical Research Institute · KEUniversity of Cambridge · GBUniversity of Oxford · GB

Funding

The Southwest National Primate Research Center Supplement- Infrastructure improvements of ABSL2 holding areasP51OD011133 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI Larry S. Schlesinger · 2012 to 2026
$129.7M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
Genetic epidemiology of complex diseasesZIAHG200362 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ROTIMI, CHARLES · 2009 to 2025
$54.7M
Focal Segmental Glomerulosclerosis: Genetics & MechanismsZIADK043308 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI KOPP, JEFFREY BURNETT · 2009 to 2024
$15.7M
Basic and Translational Research Center for Reducing Health DisparitiesG12MD007599 · NIMHD · HUNTER COLLEGE · PI ANGULO, JESUS A · 2012 to 2017
$14.6M
Genetics of Renal Disease in African AmericansZIABC010022 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WINKLER, CHERYL · 2009 to 2022
$8.9M
INFECTIOUS DISEASES &BASIC MICROBIOLOGICAL MECHANISMST32AI007180 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WEISER, JEFFREY NEAL · 1985 to 2022
$8.9M
Understanding Obesity In Relation to the Built EnvironmentP20MD006899 · NIMHD · JACKSON STATE UNIVERSITY · PI ANTOINE-LAVIGNE, DONNA A · 2012 to 2016
$5.3M
APOL1 variants: Understanding the basis of disparities in rates of kidney diseaseR01MD007092 · NIMHD · BETH ISRAEL DEACONESS MEDICAL CENTER · PI FRIEDMAN, DAVID J, POLLAK, MARTIN R. · 2012 to 2021
$4.3M
Genetic epidemiology of complex diseasesZ01HG200362 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ROTIMI, CHARLES · 2008 to 2008
$1.7M
RECEPTORS FOR THE TRYPANOLYTIC FACTORS FROM HUMAN SERUMR01AI041233 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI RAPER, JAYNE · 2004 to 2008
$1.6M
ENTPD1: A Candidate Susceptibility Gene for Renovascular DiseaseK08DK076868 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI FRIEDMAN, DAVID J · 2007 to 2011
$697k
Intramural NIH HHS Z01 HG200362NCI NIH HHS 5 P30CA16087-31NIAID NIH HHS R01 AI041233NIAID NIH HHS R01AI041233NIAID NIH HHS T32 AI007180NIDDK NIH HHS DK76868NIDDK NIH HHS K08 DK076868NIH HHS P51 OD011133NIMHD NIH HHS G12 MD007599NIMHD NIH HHS P20 MD006899NIMHD NIH HHS R01 MD007092NIMHD NIH HHS R01MD007092Wellcome Trust 085256/Z/08/ZWellcome Trust 087692/Z/08/ZWellcome Trust 101020
6 · The paper itself

Abstract

ApolipoproteinL1 (APOL1) protects humans and some primates against several African trypanosomes. APOL1 genetic variants strongly associated with kidney disease in African Americans have additional trypanolytic activity against Trypanosoma brucei rhodesiense, the cause of acute African sleeping sickness. We combined genetic, physiological, and biochemical studies to explore coevolution between the APOL1 gene and trypanosomes. We analyzed the APOL1 sequence in modern and archaic humans and baboons along with geographic distribution in present day Africa to understand how the kidney risk variants evolved. Then, we tested Old World monkey, human, and engineered APOL1 variants for their ability to kill human infective trypanosomes in vivo to identify the molecular mechanism whereby human trypanolytic APOL1 variants evade T. brucei rhodesiense virulence factor serum resistance-associated protein (SRA). For one APOL1 kidney risk variant, a two-residue deletion of amino acids 388 and 389 causes a shift in a single lysine residue that mimics the Old World monkey sequence, which augments trypanolytic activity by preventing SRA binding. A second human APOL1 kidney risk allele, with an amino acid substitution that also restores sequence alignment with Old World monkeys, protected against T. brucei rhodesiense due in part to reduced SRA binding. Both APOL1 risk variants induced tissue injury in murine livers, the site of transgenic gene expression. Our study shows that both genetic variants of human APOL1 that protect against T. brucei rhodesiense have recapitulated molecular signatures found in Old World monkeys and raises the possibility that APOL1 variants have broader innate immune activity that extends beyond trypanosomes.

Indexed as

Biological EvolutionAfricaAllelesAnimalsApolipoprotein L1ApolipoproteinsDisease ResistanceGene FrequencyGeographyHaplotypesHumansLipoproteins, HDLLysineMandrillusMiceMice, TransgenicAPOL1 protein, humanApolipoprotein L1ApolipoproteinsLipoproteins, HDLLysine

Identifiers

PMID24808134
PMCPMC4034216
OpenAlexW2101161530

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.