Evidence map›Paper›PMID 24805989›Full record

ArticlePloS one2014

Non-invasive prenatal detection of trisomy 13 using a single nucleotide polymorphism- and informatics-based approach.

Megan P Hall, Matthew Hill, Bernhard Zimmermann, Styrmir Sigurjonsson, Margaret Westemeyer, Jennifer Saucier, Zachary Demko, Matthew Rabinowitz

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  13. IONA test for first-trimester detection of trisomies 21, 18 and 13.Ultrasound in obstetrics & gynecology : the official journal of the International Society of Ultrasound in Obstetrics and Gynecology · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Megan P HallDepartment of Research and Development, Natera Inc., San Carlos, California, United States of America.
Matthew HillDepartment of Research and Development, Natera Inc., San Carlos, California, United States of America.
Bernhard ZimmermannDepartment of Research and Development, Natera Inc., San Carlos, California, United States of America.
Styrmir SigurjonssonDepartment of Research and Development, Natera Inc., San Carlos, California, United States of America.
Margaret WestemeyerDepartment of Genetic Counseling, Natera Inc., San Carlos, California, United States of America.
Jennifer SaucierDepartment of Genetic Counseling, Natera Inc., San Carlos, California, United States of America.
Zachary DemkoDepartment of Genetic Counseling, Natera Inc., San Carlos, California, United States of America.
Matthew RabinowitzDepartment of Research and Development, Natera Inc., San Carlos, California, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo determine how a single nucleotide polymorphism (SNP)- and informatics-based non-invasive prenatal aneuploidy test performs in detecting trisomy 13.

methodsSeventeen trisomy 13 and 51 age-matched euploid samples, randomly selected from a larger cohort, were analyzed. Cell-free DNA was isolated from maternal plasma, amplified in a single multiplex polymerase chain reaction assay that interrogated 19,488 SNPs covering chromosomes 13, 18, 21, X, and Y, and sequenced. Analysis and copy number identification involved a Bayesian-based maximum likelihood statistical method that generated chromosome- and sample-specific calculated accuracies.

resultsOf the samples that passed a stringent DNA quality threshold (94.1%), the algorithm correctly identified 15/15 trisomy 13 and 49/49 euploid samples, for 320/320 correct copy number calls.

conclusionsThis informatics- and SNP-based method accurately detects trisomy 13-affected fetuses non-invasively and with high calculated accuracy.

Indexed as

Chromosomes, Human, Pair 13Polymorphism, Single NucleotideAlgorithmsCase-Control StudiesChromosome DisordersComputational BiologyFemaleGenetic TestingHumansPregnancyPrenatal DiagnosisTrisomyTrisomy 13 Syndrome

Identifiers

PMID24805989
PMCPMC4013011

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.