Evidence map›Paper›PMID 24802670›Full record

ArticleThe EMBO journal2014

MiR-135b is a direct PAX6 target and specifies human neuroectoderm by inhibiting TGF-β/BMP signaling.

Akshay Bhinge, Jeremie Poschmann, Seema C Namboori, Xianfeng Tian, Sharon Jia Hui Loh, Anna Traczyk, Shyam Prabhakar, Lawrence W Stanton

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 59 citations in OpenAlex.

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  10. Identification and coregulation pattern analysis of long noncoding RNAs following subacute spinal cord injury.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2022
    Article
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  17. The Spectrum ofGenes · 2019
    Review
  18. MicroRNA Signature in Human Normal and Tumoral Neural Stem Cells.International journal of molecular sciences · 2019
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Akshay BhingeStem Cell and Developmental Biology, Genome Institute of Singapore, Singapore City, Singapore.
Jeremie PoschmannComputational and Systems Biology, Genome Institute of Singapore, Singapore City, Singapore.
Seema C NambooriStem Cell and Developmental Biology, Genome Institute of Singapore, Singapore City, Singapore.
Xianfeng TianStem Cell and Developmental Biology, Genome Institute of Singapore, Singapore City, Singapore.
Sharon Jia Hui LohStem Cell and Developmental Biology, Genome Institute of Singapore, Singapore City, Singapore.
Anna TraczykStem Cell and Developmental Biology, Genome Institute of Singapore, Singapore City, Singapore.
Shyam PrabhakarComputational and Systems Biology, Genome Institute of Singapore, Singapore City, Singapore.
Lawrence W StantonStem Cell and Developmental Biology, Genome Institute of Singapore, Singapore City, Singapore Department of Biological Sciences, National University of Singapore, Singapore City, Singapore School of Biological Sciences Nanyang Technological University, Singapore City, Singapore stantonl@gis.a-star.edu.sg.
Genome Institute of Singapore · SGNational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several transcription factors (TFs) have been implicated in neuroectoderm (NE) development, and recently, the TF PAX6 was shown to be critical for human NE specification. However, microRNA networks regulating human NE development have been poorly documented. We hypothesized that microRNAs activated by PAX6 should promote NE development. Using a genomics approach, we identified PAX6 binding sites and active enhancers genome-wide in an in vitro model of human NE development that was based on neural differentiation of human embryonic stem cells (hESC). PAX6 binding to active enhancers was found in the proximity of several microRNAs, including hsa-miR-135b. MiR-135b was activated during NE development, and ectopic expression of miR-135b in hESC promoted differentiation toward NE. MiR-135b promotes neural conversion by targeting components of the TGF-β and BMP signaling pathways, thereby inhibiting differentiation into alternate developmental lineages. Our results demonstrate a novel TF-miRNA module that is activated during human neuroectoderm development and promotes the irreversible fate specification of human pluripotent cells toward the neural lineage.

Indexed as

Gene Expression Regulation, DevelopmentalSignal TransductionBinding SitesBone Morphogenetic ProteinsCell DifferentiationCell LineEmbryonic Stem CellsEye ProteinsGene Expression ProfilingHomeodomain ProteinsHumansMicroRNAsModels, MolecularMutationNeural PlatePaired Box Transcription FactorsBone Morphogenetic ProteinsEye ProteinsHomeodomain ProteinsMicroRNAsMIRN135 microRNA, humanPaired Box Transcription FactorsPAX6 protein, humanPAX6 Transcription FactorRepressor ProteinsTranscription FactorsTransforming Growth Factor betaBMPhsa‐miR‐135bhuman embryonic stem cellsmicroRNAneuroectodermPAX6TGF‐βtranscription factor

Identifiers

PMID24802670
PMCPMC4198029
OpenAlexW2087856238

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.