Evidence map›Paper›PMID 24802207›Full record

ArticleJournal of the American Chemical Society2014

Site-specific promoter caging enables optochemical gene activation in cells and animals.

James Hemphill, Jeane Govan, Rajendra Uprety, Michael Tsang, Alexander Deiters

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Analogs ofMolecular biology · 2022
    Article
  9. Article
  10. Review
  11. Article
  12. A Benzophenone-Based Photocaging Strategy for the N7 Position of Guanosine.Angewandte Chemie (International ed. in English) · 2020
    Article
  13. Article
  14. Article
  15. Optochemical Control of Biological Processes in Cells and Animals.Angewandte Chemie (International ed. in English) · 2018
    Review
  16. Article
  17. Caged oligonucleotides for studying biological systems.Journal of inorganic biochemistry · 2015
    Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

James HemphillDepartment of Chemistry, North Carolina State University , Raleigh, North Carolina 27695, United States.
Jeane Govan
Rajendra Uprety
Michael Tsang
Alexander Deiters
University of Pittsburgh · USCenter for Systems Biology · USNorth Carolina State University · US

Funding

Switchable Systems for Spatio-Temporal Control of Gene Expression in ZebrafishR01GM079114 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI DEITERS, ALEXANDER · 2007 to 2011
$1.6M
NIGMS NIH HHS R01 GM079114NIGMS NIH HHS R01GM079114
6 · The paper itself

Abstract

In cell and molecular biology, double-stranded circular DNA constructs, known as plasmids, are extensively used to express a gene of interest. These gene expression systems rely on a specific promoter region to drive the transcription of genes either constitutively (i.e., in a continually "ON" state) or conditionally (i.e., in response to a specific transcription initiator). However, controlling plasmid-based expression with high spatial and temporal resolution in cellular environments and in multicellular organisms remains challenging. To overcome this limitation, we have site-specifically installed nucleobase-caging groups within a plasmid promoter region to enable optochemical control of transcription and, thus, gene expression, via photolysis of the caging groups. Through the light-responsive modification of plasmid-based gene expression systems, we have demonstrated optochemical activation of an exogenous fluorescent reporter gene in both tissue culture and a live animal model, as well as light-induced overexpression of an endogenous signaling protein.

Indexed as

Promoter Regions, GeneticTranscriptional ActivationAnimalsBase SequenceDNA, CircularGreen Fluorescent ProteinsHEK293 CellsHumansMolecular Sequence DataPhotolysisPlasmidsPolo-like KinasesProtein Serine-Threonine KinasesTumor Suppressor ProteinsUltraviolet RaysZebrafishDNA, Circularenhanced green fluorescent proteinGreen Fluorescent ProteinsPLK3 protein, humanPolo-like KinasesProtein Serine-Threonine KinasesTumor Suppressor Proteins

Identifiers

PMID24802207
PMCPMC4333597
OpenAlexW2087799923

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.