Evidence map›Paper›PMID 24801114›Full record

ArticleNature communications2014

Spider genomes provide insight into composition and evolution of venom and silk.

Kristian W Sanggaard, Jesper S Bechsgaard, Xiaodong Fang, Jinjie Duan, Thomas F Dyrlund, Vikas Gupta, Xuanting Jiang, Ling Cheng, Dingding Fan, Yue Feng and 17 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 148 papers.

0numbers the graph read from it
0cells of the map it votes in
148citing papers in PubMed
26.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

148 citing papers in PubMed, 317 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
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  6. Article
  7. Exploring Spiders Without Venom as New Sources of Peptidase Inhibitors.International journal of molecular sciences · 2025
    Article
  8. Genome of venomous caterpillarProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Genome size estimation and evolution trends in Acari.Experimental & applied acarology · 2025
    Article
  11. Gene and Genome Duplication in Spiders.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2025
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Spider Eye Development Editing and Silk Fiber Engineering Using CRISPR-Cas.Angewandte Chemie (International ed. in English) · 2025
    Article
  18. Article
  19. Article
  20. Article

88 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

27 authors at 3 institutions in 2 countries.

Kristian W Sanggaard1] Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark [2] Interdisciplinary Nanoscience Center (iNANO), Aarhus University, 8000 Aarhus C, Denmark [3].
Jesper S Bechsgaard1] Department of Bioscience, Aarhus University, 8000 Aarhus C, Denmark [2].
Xiaodong Fang1] BGI-Tech, BGI-Shenzhen, Shenzhen 518083, China [2] Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark [3].
Jinjie DuanBioinformatics Research Center (BiRC), Aarhus University, 8000 Aarhus C, Denmark.
Thomas F DyrlundDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark.
Vikas Gupta1] Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark [2] Bioinformatics Research Center (BiRC), Aarhus University, 8000 Aarhus C, Denmark.
Xuanting JiangBGI-Tech, BGI-Shenzhen, Shenzhen 518083, China.
Ling ChengBGI-Tech, BGI-Shenzhen, Shenzhen 518083, China.
Dingding FanBGI-Tech, BGI-Shenzhen, Shenzhen 518083, China.
Yue FengBGI-Tech, BGI-Shenzhen, Shenzhen 518083, China.
Lijuan HanBGI-Tech, BGI-Shenzhen, Shenzhen 518083, China.
Zhiyong HuangBGI-Tech, BGI-Shenzhen, Shenzhen 518083, China.
Zongze WuBGI-Tech, BGI-Shenzhen, Shenzhen 518083, China.
Li LiaoBGI-Tech, BGI-Shenzhen, Shenzhen 518083, China.
Virginia SettepaniDepartment of Bioscience, Aarhus University, 8000 Aarhus C, Denmark.
Ida B Thøgersen1] Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark [2] Interdisciplinary Nanoscience Center (iNANO), Aarhus University, 8000 Aarhus C, Denmark.
Bram VanthournoutDepartment of Bioscience, Aarhus University, 8000 Aarhus C, Denmark.
Tobias WangDepartment of Bioscience, Aarhus University, 8000 Aarhus C, Denmark.
Yabing ZhuBGI-Tech, BGI-Shenzhen, Shenzhen 518083, China.
Peter FunchDepartment of Bioscience, Aarhus University, 8000 Aarhus C, Denmark.
Jan J Enghild1] Department of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark [2] Interdisciplinary Nanoscience Center (iNANO), Aarhus University, 8000 Aarhus C, Denmark.
Leif SchauserCLC bio, Silkeborgvej 2, 8000 Aarhus C, Denmark.
Stig U AndersenDepartment of Molecular Biology and Genetics, Aarhus University, 8000 Aarhus C, Denmark.
Palle Villesen1] Bioinformatics Research Center (BiRC), Aarhus University, 8000 Aarhus C, Denmark [2] Department of Clinical Medicine, Aarhus University, 8000 Aarhus C, Denmark.
Mikkel H Schierup1] Department of Bioscience, Aarhus University, 8000 Aarhus C, Denmark [2] Bioinformatics Research Center (BiRC), Aarhus University, 8000 Aarhus C, Denmark.
Trine BildeDepartment of Bioscience, Aarhus University, 8000 Aarhus C, Denmark.
Jun Wang1] BGI-Tech, BGI-Shenzhen, Shenzhen 518083, China [2] Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark [3] King Abdulaziz University, Jeddah 21441, Saudi Arabia.
Aarhus University · DKBGI Group (China) · CNUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spiders are ecologically important predators with complex venom and extraordinarily tough silk that enables capture of large prey. Here we present the assembled genome of the social velvet spider and a draft assembly of the tarantula genome that represent two major taxonomic groups of spiders. The spider genomes are large with short exons and long introns, reminiscent of mammalian genomes. Phylogenetic analyses place spiders and ticks as sister groups supporting polyphyly of the Acari. Complex sets of venom and silk genes/proteins are identified. We find that venom genes evolved by sequential duplication, and that the toxic effect of venom is most likely activated by proteases present in the venom. The set of silk genes reveals a highly dynamic gene evolution, new types of silk genes and proteins, and a novel use of aciniform silk. These insights create new opportunities for pharmacological applications of venom and biomaterial applications of silk.

Indexed as

AnimalsBase SequenceEvolution, MolecularGenomeInsect ProteinsPeptide HydrolasesPhylogenySequence Analysis, DNASilkSpidersSpider VenomsInsect ProteinsPeptide HydrolasesSilkSpider Venoms

Identifiers

PMID24801114
PMCPMC4273655
OpenAlexW2079141278

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.