Evidence map›Paper›PMID 24800748›Full record

ArticlePloS one2014

Systematic analysis of phosphotyrosine antibodies recognizing single phosphorylated EPIYA-motifs in CagA of Western-type Helicobacter pylori strains.

Judith Lind, Steffen Backert, Klaus Pfleiderer, Douglas E Berg, Yoshio Yamaoka, Heinrich Sticht, Nicole Tegtmeyer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Clinical Pathogenesis, Molecular Mechanisms of Gastric Cancer Development.Current topics in microbiology and immunology · 2023
    Article
  3. Article
  4. Type IV secretion ofGut pathogens · 2020
    Article
  5. Article
  6. Article
  7. Unusual Manifestation of LiveInternational journal of molecular sciences · 2018
    Article
  8. Article
  9. Review
  10. Article
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  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Judith LindFriedrich Alexander University Erlangen-Nuremberg, Department of Biology, Division of Microbiology, Erlangen, Germany.
Steffen BackertFriedrich Alexander University Erlangen-Nuremberg, Department of Biology, Division of Microbiology, Erlangen, Germany.
Klaus PfleidererFriedrich Alexander University Erlangen-Nuremberg, Department of Biology, Division of Microbiology, Erlangen, Germany.
Douglas E BergDivision of Infectious Disease, Department of Medicine, University of California San Diego, La Jolla, California, United States of America.
Yoshio YamaokaOita University Faculty of Medicine, Department Environmental and Preventive Medicine, Yufu, Japan.
Heinrich StichtFriedrich Alexander University Erlangen-Nuremberg, Bioinformatics, Institute for Biochemistry, Erlangen, Germany.
Nicole TegtmeyerFriedrich Alexander University Erlangen-Nuremberg, Department of Biology, Division of Microbiology, Erlangen, Germany.
Friedrich-Alexander-Universität Erlangen-Nürnberg · DEOita University · JPUniversity of California, San Diego · US

Funding

Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI James Versalovic · 2001 to 2026
$28.3M
REGULATION OF CXC CHEMOKINE EXPRESSION BY H. PYLORIR01DK062813 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI YAMAOKA, YOSHIO · 2004 to 2013
$3.0M
NOVEL TRANSPOSONS AND PLASTICITY ZONES OF HELICOBACTER PYLORIR21AI088337 · NIAID · WASHINGTON UNIVERSITY · PI BERG, DOUGLAS EUGENE · 2010 to 2011
$416k
HELICOBACTER PYLORI GENOME SEQUENCE EVOLUTIONR21AI078237 · NIAID · WASHINGTON UNIVERSITY · PI BERG, DOUGLAS EUGENE · 2009 to 2010
$266k
NIAID NIH HHS R21 AI078237NIAID NIH HHS R21 AI088337NIDDK NIH HHS P30 DK056338NIDDK NIH HHS R01 DK062813NIDDK NIH HHS R01DK62813
6 · The paper itself

Abstract

The clinical outcome of Helicobacter pylori infections is determined by multiple host-pathogen interactions that may develop to chronic gastritis, and sometimes peptic ulcers or gastric cancer. Highly virulent strains encode a type IV secretion system (T4SS) that delivers the effector protein CagA into gastric epithelial cells. Translocated CagA undergoes tyrosine phosphorylation at EPIYA-sequence motifs, called A, B and C in Western-type strains, by members of the oncogenic Src and Abl host kinases. Phosphorylated EPIYA-motifs mediate interactions of CagA with host signaling factors--in particular various SH2-domain containing human proteins--thereby hijacking multiple downstream signaling cascades. Observations of tyrosine-phosphorylated CagA are mainly based on the use of commercial phosphotyrosine antibodies, which originally were selected to detect phosphotyrosines in mammalian proteins. Systematic studies of phosphorylated EPIYA-motif detection by the different antibodies would be very useful, but are not yet available. To address this issue, we synthesized phospho- and non-phosphopeptides representing each predominant Western CagA EPIYA-motif, and determined the recognition patterns of seven different phosphotyrosine antibodies in Western blots, and also performed infection studies with diverse representative Western H. pylori strains. Our results show that a total of 9-11 amino acids containing the phosphorylated EPIYA-motifs are necessary and sufficient for specific detection by these antibodies, but revealed great variability in sequence recognition. Three of the antibodies recognized phosphorylated EPIYA-motifs A, B and C similarly well; whereas preferential binding to phosphorylated motif A and motifs A and C was found with two and one antibodies, respectively, and the seventh anti-phosphotyrosine antibody did not recognize any phosphorylated EPIYA-motif. Controls showed that none of the antibodies recognized the corresponding non-phospho CagA peptides, and that all of them recognized phosphotyrosines in mammalian proteins. These data are valuable in judicious application of commercial anti-phosphotyrosine antibodies and in characterization of CagA phosphorylation during infection and disease development.

Indexed as

Amino Acid MotifsAmino Acid SequenceAntigens, BacterialBacterial ProteinsCell Line, TumorGastric MucosaHelicobacter InfectionsHelicobacter pyloriHumansMolecular Sequence DataPhosphorylationPhosphotyrosineSequence AlignmentAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriPhosphotyrosine

Identifiers

PMID24800748
PMCPMC4011759
OpenAlexW2029294641

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.