Evidence map›Paper›PMID 24799671›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Phosphoglucan-bound structure of starch phosphatase Starch Excess4 reveals the mechanism for C6 specificity.

David A Meekins, Madushi Raththagala, Satrio Husodo, Cory J White, Hou-Fu Guo, Oliver Kötting, Craig W Vander Kooi, Matthew S Gentry

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 65 citations in OpenAlex.

  1. A structural perspective on α-glucan catabolism in oxygenic phototrophs.The Plant journal : for cell and molecular biology · 2026
    Review
  2. Article
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  6. Emerging Functions of Protein Tyrosine Phosphatases in Plants.International journal of molecular sciences · 2024
    Review
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  17. Review
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  19. Article
  20. Structural biology of glucan phosphatases from humans to plants.Current opinion in structural biology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

David A MeekinsDepartment of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, KY 40535-0509; and.
Madushi RaththagalaDepartment of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, KY 40535-0509; and.
Satrio HusodoDepartment of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, KY 40535-0509; and.
Cory J WhiteDepartment of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, KY 40535-0509; and.
Hou-Fu GuoDepartment of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, KY 40535-0509; and.
Oliver KöttingInstitute of Agricultural Sciences, Eidgenössische Technische Hochschule (ETH) Zürich, 8092 Zürich, Switzerland.ORCID http://orcid.org/0000-0002-8977-5907
Craig W Vander KooiDepartment of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, KY 40535-0509; and matthew.gentry@uky.edu craig.vanderkooi@uky.edu.
Matthew S GentryDepartment of Molecular and Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, KY 40535-0509; and matthew.gentry@uky.edu craig.vanderkooi@uky.edu.
University of Kentucky · USBoard of the Swiss Federal Institutes of Technology · CH

Funding

Center for Biomedical Research Excellence in the Molecular Basis of Human DiseaseP20GM103486 · NIGMS · UNIVERSITY OF KENTUCKY · PI LOUIS HERSH, LOUIS HERSH LOUIS HERSH · 2012 to 2013
$4.2M
Regulation, Signaling, and Dynamics of Glucan PhosphatasesR01NS070899 · NINDS · UNIVERSITY OF KENTUCKY · PI GENTRY, MATTHEW S. · 2010 to 2019
$3.6M
NIGMS NIH HHS P20 GM103486NIGMS NIH HHS P20GM103486NINDS NIH HHS R01 NS070899NINDS NIH HHS R01NS070899
6 · The paper itself

Abstract

Plants use the insoluble polyglucan starch as their primary glucose storage molecule. Reversible phosphorylation, at the C6 and C3 positions of glucose moieties, is the only known natural modification of starch and is the key regulatory mechanism controlling its diurnal breakdown in plant leaves. The glucan phosphatase Starch Excess4 (SEX4) is a position-specific starch phosphatase that is essential for reversible starch phosphorylation; its absence leads to a dramatic accumulation of starch in Arabidopsis, but the basis for its function is unknown. Here we describe the crystal structure of SEX4 bound to maltoheptaose and phosphate to a resolution of 1.65 Å. SEX4 binds maltoheptaose via a continuous binding pocket and active site that spans both the carbohydrate-binding module (CBM) and the dual-specificity phosphatase (DSP) domain. This extended interface is composed of aromatic and hydrophilic residues that form a specific glucan-interacting platform. SEX4 contains a uniquely adapted DSP active site that accommodates a glucan polymer and is responsible for positioning maltoheptaose in a C6-specific orientation. We identified two DSP domain residues that are responsible for SEX4 site-specific activity and, using these insights, we engineered a SEX4 double mutant that completely reversed specificity from the C6 to the C3 position. Our data demonstrate that the two domains act in consort, with the CBM primarily responsible for engaging glucan chains, whereas the DSP integrates them in the catalytic site for position-specific dephosphorylation. These data provide important insights into the structural basis of glucan phosphatase site-specific activity and open new avenues for their biotechnological utilization.

Indexed as

ArabidopsisArabidopsis ProteinsCarbohydratesCatalytic DomainCloning, MolecularDual-Specificity PhosphatasesGlucansGlucosePhosphatesPhosphorylationPlant LeavesProtein BindingProtein ConformationStarchArabidopsis ProteinsAt3g52180 protein, ArabidopsisCarbohydratesDual-Specificity PhosphatasesGlucansGlucosemaltoheptaosePhosphatesStarchcarbohydrateLafora diseaselaforinLSF2

Identifiers

PMID24799671
PMCPMC4034183
OpenAlexW2062954775

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.