Evidence map›Paper›PMID 24798326›Full record

ArticleThe Journal of biological chemistry2014

The third exon of the budding yeast meiotic recombination gene HOP2 is required for calcium-dependent and recombinase Dmc1-specific stimulation of homologous strand assimilation.

Yuen-Ling Chan, M Scott Brown, Daoming Qin, Naofumi Handa, Douglas K Bishop

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 37 citations in OpenAlex.

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  11. How strand exchange protein function benefits from ATP hydrolysis.Current opinion in genetics & development · 2021
    Review
  12. Two auxiliary factors promote Dmc1-driven DNA strand exchange via stepwise mechanisms.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Yuen-Ling ChanFrom the Departments of Radiation and Cellular Oncology and.
M Scott BrownFrom the Departments of Radiation and Cellular Oncology and.
Daoming QinMolecular Genetics and Cell Biology, Cummings Life Science Center, University of Chicago, Chicago, Illinois 60637 and.
Naofumi Handathe Department of Microbiology and Molecular Genetics, University of California, Davis, California 95616.
Douglas K BishopFrom the Departments of Radiation and Cellular Oncology and Molecular Genetics and Cell Biology, Cummings Life Science Center, University of Chicago, Chicago, Illinois 60637 and dbishop@uchicago.edu.
Cellular Research (United States) · USUniversity of Chicago · USUniversity of California, Davis · US

Funding

Molecular And Cellular Biology Training ProgramT32GM007183 · NIGMS · UNIVERSITY OF CHICAGO · PI GLICK, BENJAMIN S, RICE, PHOEBE A · 1985 to 2021
$23.9M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
MEIOTIC INTERACTIONS TO THE RECA HOMOLOGUE DMC1R01GM050936 · NIGMS · UNIVERSITY OF CHICAGO · PI BISHOP, DOUGLAS K · 1994 to 2019
$9.2M
NCATS NIH HHS UL1 TR000430NIGMS NIH HHS GM050936NIGMS NIH HHS R01 GM050936NIGMS NIH HHS T32 GM007183
6 · The paper itself

Abstract

During meiosis in Saccharomyces cerevisiae, the HOP2 and MND1 genes are essential for recombination. A previous biochemical study has shown that budding yeast Hop2-Mnd1 stimulates the activity of the meiosis-specific strand exchange protein ScDmc1 only 3-fold, whereas analogous studies using mammalian homologs show >30-fold stimulation. The HOP2 gene was recently discovered to contain a second intron that lies near the 3'-end. We show that both HOP2 introns are efficiently spliced during meiosis, forming a predominant transcript that codes for a protein with a C-terminal sequence different from that of the previously studied version of the protein. Using the newly identified HOP2 open reading frame to direct synthesis of wild type Hop2 protein, we show that the Hop2-Mnd1 heterodimer stimulated Dmc1 D-loop activity up to 30-fold, similar to the activity of mammalian Hop2-Mnd1. ScHop2-Mnd1 stimulated ScDmc1 activity in the presence of physiological (micromolar) concentrations of Ca(2+) ions, as long as Mg(2+) was also present at physiological concentrations, leading us to hypothesize that ScDmc1 protomers bind both cations in the active Dmc1 filament. Co-factor requirements and order-of-addition experiments suggested that Hop2-Mnd1-mediated stimulation of Dmc1 involves a process that follows the formation of functional Dmc1-ssDNA filaments. In dramatic contrast to mammalian orthologs, the stimulatory activity of budding yeast Hop2-Mnd1 appeared to be specific to Dmc1; we observed no Hop2-Mnd1-mediated stimulation of the other budding yeast strand exchange protein Rad51. Together, these results support previous genetic experiments indicating that Hop2-Mnd1 specifically stimulates Dmc1 during meiotic recombination in budding yeast.

Indexed as

Homologous RecombinationAmino Acid SequenceBase SequenceCalciumCell Cycle ProteinsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA, FungalExonsMeiosisMolecular Sequence DataRad51 RecombinaseSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCalciumCell Cycle ProteinsChromosomal Proteins, Non-HistoneDMC1 protein, S cerevisiaeDNA-Binding ProteinsDNA, FungalHOP2 protein, S cerevisiaeMND1 protein, S cerevisiaeRad51 RecombinaseSaccharomyces cerevisiae ProteinsCalciumDmc1DNA RecombinationHomologous RecombinationHop2-Mnd1 ComplexIntronsMeiosisRad51Yeast

Identifiers

PMID24798326
PMCPMC4140259
OpenAlexW2015644763

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.