Evidence map›Paper›PMID 24797265›Full record

ArticleMolecular & cellular proteomics : MCP2014

O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry.

Thibault Chaze, Alain Guillot, Benoît Valot, Olivier Langella, Julia Chamot-Rooke, Anne-Marie Di Guilmi, Patrick Trieu-Cuot, Shaynoor Dramsi, Michel-Yves Mistou

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

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  3. The glycosylation in SARS-CoV-2 and its receptor ACE2.Signal transduction and targeted therapy · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Thibault ChazeFrom the ‡INRA, MICALIS UMR-1319, 78352 Jouy-en-Josas cedex, France; §AgroParisTech, MICALIS UMR-1319, 78352 Jouy-en-Josas cedex, France; ¶¶Institut Pasteur, Unité de Spectrométrie de Masse Structurale et Protéomique, 28 rue du Dr Roux, 75015 Paris, France;
Alain Guillot¶INRA, PAPPSO, MICALIS UMR-1319, 78352 Jouy en Josas cedex, France;
Benoît Valot‖INRA, PAPPSO, Génétique végétale UMR-320, Ferme du Moulon, 91190 Gif sur Yvette, France;
Olivier Langella‖INRA, PAPPSO, Génétique végétale UMR-320, Ferme du Moulon, 91190 Gif sur Yvette, France;
Julia Chamot-Rooke¶¶Institut Pasteur, Unité de Spectrométrie de Masse Structurale et Protéomique, 28 rue du Dr Roux, 75015 Paris, France; ‖‖CNRS UMR 3528, Institut Pasteur, 28 rue du Dr Roux, 75015 Paris, France.
Anne-Marie Di Guilmi**CEA, Institut de Biologie Structurale Jean-Pierre Ebel, F-38027 Grenoble, France;
Patrick Trieu-Cuot‡‡Institut Pasteur, Unité de Biologie des Bactéries Pathogènes à Gram+, 28, rue du Dr Roux, 75015 Paris, France; §§Centre National de la Recherche Scientifique, CNRS ERL3526, Paris, France;
Shaynoor Dramsi‡‡Institut Pasteur, Unité de Biologie des Bactéries Pathogènes à Gram+, 28, rue du Dr Roux, 75015 Paris, France; §§Centre National de la Recherche Scientifique, CNRS ERL3526, Paris, France;
Michel-Yves MistouFrom the ‡INRA, MICALIS UMR-1319, 78352 Jouy-en-Josas cedex, France; §AgroParisTech, MICALIS UMR-1319, 78352 Jouy-en-Josas cedex, France; mistou@jouy.inra.fr.
Institut National de la Recherche Agronomique · MACentre de Gestion Scientifique · FRAgroParisTech · FRCEA Grenoble · FRCentre National de la Recherche Scientifique · FRInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Serine-rich (Srr) proteins exposed at the surface of Gram-positive bacteria are a family of adhesins that contribute to the virulence of pathogenic staphylococci and streptococci. Lectin-binding experiments have previously shown that Srr proteins are heavily glycosylated. We report here the first mass-spectrometry analysis of the glycosylation of Streptococcus agalactiae Srr1. After Srr1 enrichment and trypsin digestion, potential glycopeptides were identified in collision induced dissociation spectra using X! Tandem. The approach was then refined using higher energy collisional dissociation fragmentation which led to the simultaneous loss of sugar residues, production of diagnostic oxonium ions and backbone fragmentation for glycopeptides. This feature was exploited in a new open source software tool (SpectrumFinder) developed for this work. By combining these approaches, 27 glycopeptides corresponding to six different segments of the N-terminal region of Srr1 [93-639] were identified. Our data unambiguously indicate that the same protein residue can be modified with different glycan combinations including N-acetylhexosamine, hexose, and a novel modification that was identified as O-acetylated-N-acetylhexosamine. Lectin binding and monosaccharide composition analysis strongly suggested that HexNAc and Hex correspond to N-acetylglucosamine and glucose, respectively. The same protein segment can be modified with a variety of glycans generating a wide structural diversity of Srr1. Electron transfer dissociation was used to assign glycosylation sites leading to the unambiguous identification of six serines and one threonine residues. Analysis of purified Srr1 produced in mutant strains lacking accessory glycosyltransferase encoding genes demonstrates that O-GlcNAcylation is an initial step in Srr1 glycosylation that is likely required for subsequent decoration with Hex. In summary, our data obtained by a combination of fragmentation mass spectrometry techniques associated to a new software tool, demonstrate glycosylation heterogeneity of Srr1, characterize a new protein modification, and identify six glycosylation sites located in the N-terminal region of the protein.

Indexed as

Adhesins, BacterialChromatography, LiquidGlycopeptidesGlycosylationMonosaccharidesSerineSoftwareStreptococcus agalactiaeTandem Mass SpectrometryAdhesins, BacterialGlycopeptidesMonosaccharidesSerineSrr-1 protein, Streptococcus agalactiae

Identifiers

PMID24797265
PMCPMC4159642
OpenAlexW2095089677

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.