Evidence map›Paper›PMID 24795744›Full record

ArticleFrontiers in genetics2014

Trans-regulation of RNA-binding protein motifs by microRNA.

Francis Doyle, Scott A Tenenbaum

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Review
  3. New Avenues of Heme Synthesis Regulation.International journal of molecular sciences · 2022
    Review
  4. A regulatory network of microRNAs confers lineage commitment during early developmental trajectories of B and T lymphocytes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Francis DoyleNanobioscience Constellation, College of Nanoscale Science and Engineering, State University of New York Albany, NY, USA.
Scott A TenenbaumNanobioscience Constellation, College of Nanoscale Science and Engineering, State University of New York Albany, NY, USA.
SUNY Polytechnic Institute · US

Funding

Comprehensive Identification of ENCODE RNA based Cis-Regulatory ElementsU01HG004571 · NHGRI · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI TENENBAUM, SCOTT A · 2007 to 2011
$2.6M
In-vivo miRNA Detection Using Structurally Interacting RNA (sxRNA)R41GM097811 · NIGMS · HOCUSLOCUS, INC. · PI TENENBAUM, SCOTT A · 2011 to 2011
$294k
NHGRI NIH HHS U01 HG004571NIGMS NIH HHS R41 GM097811
6 · The paper itself

Abstract

The wide array of vital functions that RNA performs is dependent on its ability to dynamically fold into different structures in response to intracellular and extracellular changes. RNA-binding proteins regulate much of this activity by targeting specific RNA structures or motifs. One of these structures, the 3-way RNA junction, is characteristically found in ribosomal RNA and results from the RNA folding in cis, to produce three separate helices that meet around a central unpaired region. Here we demonstrate that 3-way junctions can also form in trans as a result of the binding of microRNAs in an unconventional manner with mRNA by splinting two non-contiguous regions together. This may be used to reinforce the base of a stem-loop motif being targeted by an RNA-binding protein. Trans interactions between non-coding RNA and mRNA may be used to control the post-transcriptional regulatory code and suggests a possible role for some of the recently described transcripts of unknown function expressed from the human genome.

Indexed as

dark mattermicroRNA (miRNA)non-coding RNApost-transcriptional regulationRNA-binding proteins (RBPs)stem-loop binding protein (SLBP)structural interacting RNA (sxRNA)

Identifiers

PMID24795744
PMCPMC4006066
OpenAlexW1997366178

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.