Evidence map›Paper›PMID 24795370›Full record

ArticleApplied and environmental microbiology2014

Functional genomic characterization of virulence factors from necrotizing fasciitis-causing strains of Aeromonas hydrophila.

Christopher J Grim, Elena V Kozlova, Duraisamy Ponnusamy, Eric C Fitts, Jian Sha, Michelle L Kirtley, Christina J van Lier, Bethany L Tiner, Tatiana E Erova, Sandeep J Joseph and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
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  8. Pathogens (Basel, Switzerland) · 2024
    Review
  9. Genomic analysis of clinicalMicrobial genomics · 2024
    Article
  10. Article
  11. Review
  12. Interactions betweenFrontiers in microbiology · 2024
    Article
  13. Tad pili contribute to the virulence and biofilm formation of virulentFrontiers in cellular and infection microbiology · 2024
    Article
  14. Molecular Profiling of a Multi-Strain HypervirulentInfection and drug resistance · 2023
    Article
  15. Potential Pathogenicity ofPathogens (Basel, Switzerland) · 2022
    Article
  16. Article
  17. Article
  18. Bacteriophages with Potential to InactivateAntibiotics (Basel, Switzerland) · 2021
    Article
  19. In silico comparative analysis of Aeromonas Type VI Secretion System.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 1 country.

Christopher J GrimFood and Drug Administration, Laurel, Maryland, USA.
Elena V KozlovaDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Duraisamy PonnusamyDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Eric C FittsDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Jian ShaDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Michelle L KirtleyDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Christina J van LierDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Bethany L TinerDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Tatiana E ErovaDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Sandeep J JosephDepartment of Medicine, Division of Infectious Diseases, Emory University School of Medicine, Atlanta, Georgia, USA.
Timothy D ReadDepartment of Medicine, Division of Infectious Diseases, Emory University School of Medicine, Atlanta, Georgia, USA.
Joshua R ShakDepartment of Medicine, Division of Infectious Diseases, Emory University School of Medicine, Atlanta, Georgia, USA.
Sam W JosephDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland, USA Maryland Institute of Applied Environmental Health, School of Public Health, University of Maryland, College Park, Maryland, USA.
Ed SingletaryDoctors Hospital, Augusta, Georgia, USA.
Tracy FellandMercy Hospital and Trauma Center, Janesville, Wisconsin, USA.
Wallace B BazeDepartment of Veterinary Sciences, M. D. Anderson Cancer Center, Bastrop, Texas, USA.
Amy J HornemanPathology and Laboratory Medical Services, VA Maryland Health Care System, Baltimore, Maryland, USA.
Ashok K ChopraDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA achopra@utmb.edu.
The University of Texas Medical Branch at Galveston · USEmory University · USDoctors Hospital · USMercy Hospital · USThe University of Texas MD Anderson Cancer Center · USUnited States Food and Drug Administration · USUniversity of Maryland, College Park · USVA Maryland Health Care System · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008169 · NIGMS · EMORY UNIVERSITY · PI GROSS, ROBERT E · 1987 to 2021
$20.3M
NIGMS NIH HHS T32 GM008169
6 · The paper itself

Abstract

The genomes of 10 Aeromonas isolates identified and designated Aeromonas hydrophila WI, Riv3, and NF1 to NF4; A. dhakensis SSU; A. jandaei Riv2; and A. caviae NM22 and NM33 were sequenced and annotated. Isolates NF1 to NF4 were from a patient with necrotizing fasciitis (NF). Two environmental isolates (Riv2 and -3) were from the river water from which the NF patient acquired the infection. While isolates NF2 to NF4 were clonal, NF1 was genetically distinct. Outside the conserved core genomes of these 10 isolates, several unique genomic features were identified. The most virulent strains possessed one of the following four virulence factors or a combination of them: cytotoxic enterotoxin, exotoxin A, and type 3 and 6 secretion system effectors AexU and Hcp. In a septicemic-mouse model, SSU, NF1, and Riv2 were the most virulent, while NF2 was moderately virulent. These data correlated with high motility and biofilm formation by the former three isolates. Conversely, in a mouse model of intramuscular infection, NF2 was much more virulent than NF1. Isolates NF2, SSU, and Riv2 disseminated in high numbers from the muscular tissue to the visceral organs of mice, while NF1 reached the liver and spleen in relatively lower numbers on the basis of colony counting and tracking of bioluminescent strains in real time by in vivo imaging. Histopathologically, degeneration of myofibers with significant infiltration of polymorphonuclear cells due to the highly virulent strains was noted. Functional genomic analysis provided data that allowed us to correlate the highly infectious nature of Aeromonas pathotypes belonging to several different species with virulence signatures and their potential ability to cause NF.

Indexed as

Genes, BacterialAeromonas hydrophilaAnimalsBiofilmsDisease Models, AnimalDNA, BacterialEnterotoxinsFasciitis, NecrotizingFemaleFresh WaterGenetic Association StudiesGram-Negative Bacterial InfectionsHumansMicePhylogenyPlagueDNA, BacterialEnterotoxinsVirulence Factors

Identifiers

PMID24795370
PMCPMC4068668
OpenAlexW2167542132

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.