Evidence map›Paper›PMID 24794562›Full record

ArticleJournal of bacteriology2014

Genetic analysis of the assimilation of C5-dicarboxylic acids in Pseudomonas aeruginosa PAO1.

Benjamin R Lundgren, Luis Roberto Villegas-Peñaranda, Joshua R Harris, Alexander M Mottern, Diana M Dunn, Christopher N Boddy, Christopher T Nomura

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Role of Two-Component System Networks in Pseudomonas aeruginosa Pathogenesis.Advances in experimental medicine and biology · 2022
    Article
  5. Article
  6. The Regulatory Functions of σInternational journal of molecular sciences · 2021
    Review
  7. Article
  8. Article
  9. Microbial Musings - September 2020.Microbiology (Reading, England) · 2020
    Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Benjamin R LundgrenDepartment of Chemistry, State University of New York, College of Environmental Science and Forestry, Syracuse, New York, USA.
Luis Roberto Villegas-PeñarandaDepartment of Chemistry, University of Ottawa, Ottawa, Ontario, Canada.
Joshua R HarrisDepartment of Chemistry, State University of New York, College of Environmental Science and Forestry, Syracuse, New York, USA.
Alexander M MotternDepartment of Chemistry, State University of New York, College of Environmental Science and Forestry, Syracuse, New York, USA.
Diana M DunnDepartment of Chemistry, State University of New York, College of Environmental Science and Forestry, Syracuse, New York, USA.
Christopher N BoddyDepartment of Chemistry, University of Ottawa, Ottawa, Ontario, Canada.
Christopher T NomuraDepartment of Chemistry, State University of New York, College of Environmental Science and Forestry, Syracuse, New York, USA Center for Applied Microbiology, State University of New York College of Environmental Science and Forestry, Syracuse, New York, USA ctnomura@esf.edu.
York University · USUniversity of Ottawa · CA

Funding

Translational Research Center to Expedite Novel Therapies in Cystic FibrosisP30DK089507 · NIDDK · SEATTLE CHILDREN'S HOSPITAL · PI Christopher Hooper Goss, Lucas R Hoffman · 2010 to 2026
$21.4M
Defining the inputs and outputs of enhancer-binding protein regulation in Pseudomonas aeruginosaR15GM104880 · NIGMS · COLLEGE OF ENVIRONMENTAL SCI & FORESTRY · PI LEYDET, BRIAN F. · 2013 to 2018
$1.3M
NIDDK NIH HHS P30 DK089507NIGMS NIH HHS R15 GM104880NIGMS NIH HHS R15 GM104880-01A1
6 · The paper itself

Abstract

There is a wealth of information on the genetic regulation and biochemical properties of bacterial C4-dicarboxylate transport systems. In sharp contrast, there are far fewer studies describing the transport and assimilation of C5-dicarboxylates among bacteria. In an effort to better our understanding on this subject, we identified the structural and regulatory genes necessary for the utilization of α-ketoglutarate (α-KG) in Pseudomonas aeruginosa PAO1. The PA5530 gene, encoding a putative dicarboxylate transporter, was found to be essential for the growth of P. aeruginosa PAO1 on both α-KG and glutarate (another C5-dicarboxylate). Metabolite analysis confirmed that the PA5530 gene was necessary for the uptake of extracellular α-KG. Like other substrate-inducible transporter genes, expression of the PA5530 gene was induced by extracellular C5-dicarboxylates. It was later found that the expression of the PA5530 gene was driven solely by a -24/-12 promoter recognized by the alternative sigma factor RpoN. Surprisingly, the enhancer binding protein MifR, which is known to have an essential role in biofilm development, was required for the expression of the PA5530 gene. The MifR protein is homologous to other transcriptional regulators involved in dicarboxylate assimilation, suggesting that MifR might interact with RpoN to activate the expression of the PA5530 gene in response to extracellular C5-dicarboxylates, especially α-KG. The results of this study provide a framework for exploring the assimilation of α-KG in other pseudomonads.

Indexed as

Bacterial ProteinsBiological TransportCarrier ProteinsGene Expression Regulation, BacterialKetoglutaric AcidsPseudomonas aeruginosaBacterial ProteinsCarrier ProteinsKetoglutaric Acids

Identifiers

PMID24794562
PMCPMC4097582
OpenAlexW2096986619

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.