Evidence map›Paper›PMID 24794443›Full record

ArticleCell reports2014

CTCF haploinsufficiency destabilizes DNA methylation and predisposes to cancer.

Christopher J Kemp, James M Moore, Russell Moser, Brady Bernard, Matt Teater, Leslie E Smith, Natalia A Rabaia, Kay E Gurley, Justin Guinney, Stephanie E Busch and 6 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed, 1 pooled it
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 1 synthesis or guideline pooled it, 184 citations in OpenAlex.

  1. An updated catalog ofFrontiers in molecular neuroscience · 2023
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66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Christopher J KempDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA. Electronic address: cjkemp@fhcrc.org.
James M MooreDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Russell MoserDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Brady BernardInstitute for Systems Biology, Seattle, WA 98106, USA.
Matt TeaterDivision of Hematology/Oncology, Weill Cornell Medical College, New York, NY 10021, USA.
Leslie E SmithDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Natalia A RabaiaDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Kay E GurleyDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Justin GuinneySage Bionetworks, 1100 Fairview Avenue, Seattle, WA 98109, USA.
Stephanie E BuschDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Rita ShaknovichDivision of Hematology/Oncology, Weill Cornell Medical College, New York, NY 10021, USA.
Victor V LobanenkovMolecular Pathology Section, Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, NIH, Rockville, MD 20852, USA.
Denny LiggittDepartment of Comparative Medicine, University of Washington, Seattle, WA 98195, USA.
Ilya ShmulevichInstitute for Systems Biology, Seattle, WA 98106, USA.
Ari MelnickDivision of Hematology/Oncology, Weill Cornell Medical College, New York, NY 10021, USA.
Galina N FilippovaDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA. Electronic address: gfilippo@fhcrc.org.
Fred Hutch Cancer Center · USCornell University · USInstitute for Systems Biology · USNational Institute of Allergy and Infectious Diseases · USSage Bionetworks · USUniversity of Washington · US

Funding

XENOBIOTIC BIOTRANSFORMATION AND DISPOSITIONP30ES007033 · NIEHS · UNIVERSITY OF WASHINGTON · PI ALI SHOJAIE · 1995 to 2026
$42.5M
Research Education About Cancer and Health (REACH) CoreU54CA132381 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KAREN R PETERSON · 2007 to 2026
$25.3M
TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
Normal and Pathologic Functions of CTCF and Its Distinct Classes of DNA-targetsZIAAI000860 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI LOBANENKOV, VICTOR · 2009 to 2025
$15.4M
CORE--VECTOR PRODUCTIONP30DK056465 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HEIMFELD, SHELLY · 1999 to 2014
$14.9M
Regulation of CTCF Functions and Target Sites by Cancer/Testis-specific CTCF Like BORIS FactorZIAAI001021 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI LOBANENKOV, VICTOR · 2009 to 2025
$12.7M
Center for Systems Analysis of the Cancer RegulomeU24CA143835 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI SHMULEVICH, ILYA · 2009 to 2016
$10.6M
An integrated computational and functional genomics discovery engine for precliniU01CA176303 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KEMP, CHRISTOPHER J · 2013 to 2016
$4.1M
STRUCTURE AND FUNCTION OF CTCF--TRANSGENIC MICE STUDIESR01CA068360 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI FILIPPOVA, GALINA N · 1996 to 2007
$3.2M
Preventive Interventions Leadership U01U01CA141550 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI HANASH, SAMIR M · 2009 to 2013
$2.0M
NCI NIH HHS CA68360NCI NIH HHS R01 CA068360NCI NIH HHS U01 CA141550NCI NIH HHS U01 CA176303NCI NIH HHS U24 CA143835NCI NIH HHS U24CA143835NCI NIH HHS U54 CA132381NIDA NIH HHS DA030326NIDDK NIH HHS P30 DK056465NIEHS NIH HHS ES007033NIEHS NIH HHS P30 ES007033NIGMS NIH HHS T32 GM007270
6 · The paper itself

Abstract

Epigenetic alterations, particularly in DNA methylation, are ubiquitous in cancer, yet the molecular origins and the consequences of these alterations are poorly understood. CTCF, a DNA-binding protein that regulates higher-order chromatin organization, is frequently altered by hemizygous deletion or mutation in human cancer. To date, a causal role for CTCF in cancer has not been established. Here, we show that Ctcf hemizygous knockout mice are markedly susceptible to spontaneous, radiation-, and chemically induced cancer in a broad range of tissues. Ctcf(+/-) tumors are characterized by increased aggressiveness, including invasion, metastatic dissemination, and mixed epithelial/mesenchymal differentiation. Molecular analysis of Ctcf(+/-) tumors indicates that Ctcf is haploinsufficient for tumor suppression. Tissues with hemizygous loss of CTCF exhibit increased variability in CpG methylation genome wide. These findings establish CTCF as a prominent tumor-suppressor gene and point to CTCF-mediated epigenetic stability as a major barrier to neoplastic progression.

Indexed as

DNA MethylationGenes, Tumor SuppressorAnimalsCCCTC-Binding FactorCell Line, TumorEpigenesis, GeneticGene Expression Regulation, NeoplasticGenetic Predisposition to DiseaseHaploinsufficiencyHumansMiceMice, Inbred C57BLMice, TransgenicMutationNeoplasmsProtein BindingCCCTC-Binding FactorCTCF protein, humanCtcf protein, mouseRepressor Proteins

Identifiers

PMID24794443
PMCPMC4040130
OpenAlexW1984714342

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.