Evidence map›Paper›PMID 24793136›Full record

ArticleNature genetics2014

Pan-cancer genetic analysis identifies PARK2 as a master regulator of G1/S cyclins.

Yongxing Gong, Travis Ian Zack, Luc G T Morris, Kan Lin, Ellen Hukkelhoven, Radhika Raheja, I-Li Tan, Sevin Turcan, Selvaraju Veeriah, Shasha Meng and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed, 3 pooled it
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 3 syntheses or guidelines pooled it, 173 citations in OpenAlex.

  1. Association ofFrontiers in endocrinology · 2025
    Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Neural cell state modulation bybioRxiv : the preprint server for biology · 2026
    Article
  6. Review
  7. Frontiers in oncology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Deficiency in the mitophagy mediator Parkin accelerates murine skin allograft rejection.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2024
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review

58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Yongxing GongHuman Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.
Travis Ian Zack1] Broad Institute, Cambridge, Massachusetts, USA. [2] Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA. [3] Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA. [4] Center for Cancer Genome Characterization, Dana-Farber Cancer Institute, Boston, Massachusetts, USA. [5] Biophysics Program, Harvard University, Boston, Massachusetts, USA.
Luc G T MorrisDepartment of Surgery, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.
Kan LinWeill Cornell College of Medicine, New York, New York, USA.
Ellen HukkelhovenMolecular Biology Program, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.
Radhika RahejaMolecular Biology Program, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.
I-Li TanWeill Cornell College of Medicine, New York, New York, USA.
Sevin TurcanHuman Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.
Selvaraju VeeriahHuman Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.
Shasha MengHuman Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.
Agnes VialeGenomics Core, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.
Steven E SchumacherBroad Institute, Cambridge, Massachusetts, USA.
Perry Palmedo1] Broad Institute, Cambridge, Massachusetts, USA. [2] Center for Biomedical Informatics, Harvard University, Boston, Massachusetts, USA.ORCID 0000000210585773
Rameen Beroukhim1] Broad Institute, Cambridge, Massachusetts, USA. [2] Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA. [3] Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA. [4] Center for Cancer Genome Characterization, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Timothy A Chan1] Human Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, New York, USA. [2] Department of Radiation Oncology, Memorial Sloan-Kettering Cancer Center, New York, New York, USA. [3] Brain Tumor Center, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.
Memorial Sloan Kettering Cancer Center · USBroad Institute · USCornell University · USDana-Farber Cancer Institute · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
Translational Research in Oncology Training ProgramT32CA160001 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SAWYERS, CHARLES L. · 2011 to 2020
$2.0M
Role of Parkinson's disease gene PARK2 in GBM oncogenesis and genomic instabilityR01NS086875 · NINDS · SLOAN-KETTERING INST CAN RESEARCH · PI CHAN, TIMOTHY AN-THY · 2013 to 2015
$1.2M
Functionalizing recurrent FAT1 mutations and deletions in oral cancerK08DE024774 · NIDCR · SLOAN-KETTERING INST CAN RESEARCH · PI MORRIS, LUC GORDON TRANG · 2014 to 2018
$682k
NCI NIH HHS 5T32CA160001NCI NIH HHS P30 CA008748NCI NIH HHS T32 CA160001NHGRI NIH HHS T32 HG002295NIDCR NIH HHS K08 DE024774NINDS NIH HHS R01 NS086875NINDS NIH HHS R01 NS086875-01
6 · The paper itself

Abstract

Coordinate control of different classes of cyclins is fundamentally important for cell cycle regulation and tumor suppression, yet the underlying mechanisms are incompletely understood. Here we show that the PARK2 tumor suppressor mediates this coordination. The PARK2 E3 ubiquitin ligase coordinately controls the stability of both cyclin D and cyclin E. Analysis of approximately 5,000 tumor genomes shows that PARK2 is a very frequently deleted gene in human cancer and uncovers a striking pattern of mutual exclusivity between PARK2 deletion and amplification of CCND1, CCNE1 or CDK4-implicating these genes in a common pathway. Inactivation of PARK2 results in the accumulation of cyclin D and acceleration of cell cycle progression. Furthermore, PARK2 is a component of a new class of cullin-RING-containing ubiquitin ligases targeting both cyclin D and cyclin E for degradation. Thus, PARK2 regulates cyclin-CDK complexes, as does the CDK inhibitor p16, but acts as a master regulator of the stability of G1/S cyclins.

Indexed as

Cell CycleGene Expression Regulation, NeoplasticAnimalsCell Line, TumorCyclin D1Cyclin-Dependent Kinase 4Cyclin-Dependent Kinase Inhibitor p16Cyclin EG1 PhaseGene DeletionGene Expression ProfilingGenes, Tumor SuppressorGenome, HumanGenomicsHumansInsectaCCND1 protein, humanCCNE1 protein, humanCDK4 protein, humanCyclin D1Cyclin-Dependent Kinase 4Cyclin-Dependent Kinase Inhibitor p16Cyclin EOncogene Proteinsparkin proteinRNA, Small InterferingUbiquitin-Protein Ligases

Identifiers

PMID24793136
PMCPMC4251771
OpenAlexW1970254583

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.