Evidence map›Paper›PMID 24792952›Full record

ArticleNature chemical biology2014

Designed abscisic acid analogs as antagonists of PYL-PP2C receptor interactions.

Jun Takeuchi, Masanori Okamoto, Tomonori Akiyama, Takuya Muto, Shunsuke Yajima, Masayuki Sue, Mitsunori Seo, Yuri Kanno, Tsunashi Kamo, Akira Endo and 5 more

Abstract read
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In one paragraph

Article in Nature chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
19.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 108 citations in OpenAlex.

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  8. Click-to-lead design of a picomolar ABA receptor antagonist with potent activity in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. An Update on Crop ABA Receptors.Plants (Basel, Switzerland) · 2021
    Review
  10. Review
  11. Recent Advances in Plant Chemical Biology of Jasmonates.International journal of molecular sciences · 2020
    Review
  12. Article
  13. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 3 countries.

Jun Takeuchi1] Graduate School of Science and Technology, Shizuoka University, Shizuoka, Japan. [2].
Masanori Okamoto1] Arid Land Research Center, Tottori University, Tottori, Japan. [2] Department of Botany and Plant Sciences and Center for Plant Cell Biology, University of California-Riverside, Riverside, California, USA. [3].
Tomonori AkiyamaDepartment of Bioscience, Tokyo University of Agriculture, Tokyo, Japan.
Takuya MutoGraduate School of Agriculture, Shizuoka University, Shizuoka, Japan.
Shunsuke YajimaDepartment of Bioscience, Tokyo University of Agriculture, Tokyo, Japan.
Masayuki SueDepartment of Applied Biology and Chemistry, Tokyo University of Agriculture, Tokyo, Japan.
Mitsunori SeoRIKEN Center for Sustainable Resource Science, Kanagawa, Japan.
Yuri KannoRIKEN Center for Sustainable Resource Science, Kanagawa, Japan.
Tsunashi KamoNational Institute for Agro-Environmental Sciences, Ibaraki, Japan.
Akira Endo1] Department of Cell and Systems Biology, University of Toronto, Toronto, Ontario, Canada. [2].
Eiji NambaraDepartment of Cell and Systems Biology, University of Toronto, Toronto, Ontario, Canada.
Nobuhiro HiraiGraduate School of Agriculture, Kyoto University, Kyoto, Japan.
Toshiyuki Ohnishi1] Graduate School of Agriculture, Shizuoka University, Shizuoka, Japan. [2] Research Institute of Green Science and Technology, Shizuoka University, Shizuoka, Japan.
Sean R CutlerDepartment of Botany and Plant Sciences and Center for Plant Cell Biology, University of California-Riverside, Riverside, California, USA.
Yasushi Todoroki1] Graduate School of Science and Technology, Shizuoka University, Shizuoka, Japan. [2] Graduate School of Agriculture, Shizuoka University, Shizuoka, Japan. [3] Research Institute of Green Science and Technology, Shizuoka University, Shizuoka, Japan.
Shizuoka University · JPTokyo University of Agriculture · JPRIKEN Center for Sustainable Resource Science · JPUniversity of Toronto · CAKyoto University · JPNational Institute for Agro-Environmental Sciences · JPTottori University · JPUniversity of California, Riverside · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant stress hormone abscisic acid (ABA) is critical for several abiotic stress responses. ABA signaling is normally repressed by group-A protein phosphatases 2C (PP2Cs), but stress-induced ABA binds Arabidopsis PYR/PYL/RCAR (PYL) receptors, which then bind and inhibit PP2Cs. X-ray structures of several receptor-ABA complexes revealed a tunnel above ABA's 3' ring CH that opens at the PP2C binding interface. Here, ABA analogs with sufficiently long 3' alkyl chains were predicted to traverse this tunnel and block PYL-PP2C interactions. To test this, a series of 3'-alkylsulfanyl ABAs were synthesized with different alkyl chain lengths. Physiological, biochemical and structural analyses revealed that a six-carbon alkyl substitution produced a potent ABA antagonist that was sufficiently active to block multiple stress-induced ABA responses in vivo. This study provides a new approach for the design of ABA analogs, and the results validated structure-based design for this target class.

Indexed as

Plant Growth RegulatorsAbscisic AcidArabidopsisArabidopsis ProteinsGerminationLactucaModels, MolecularPhosphoprotein PhosphatasesPlant Physiological PhenomenaProtein BindingRaphanusSeedsStructure-Activity RelationshipAbscisic AcidArabidopsis ProteinsPhosphoprotein PhosphatasesPlant Growth Regulators

Identifiers

PMID24792952
OpenAlexW1969377459

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.