Evidence map›Paper›PMID 2479266›Full record

ArticleAmerican journal of human genetics1989

Chromosome heteromorphism quantified by high-resolution bivariate flow karyotyping.

B Trask, G van den Engh, B Mayall, J W Gray

Abstract read
In one paragraph

Article in American journal of human genetics, 1989. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. De novo formed satellite DNA-based mammalian artificial chromosomes and their possible applications.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2015
    Review
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  10. Chromosome-specific paints from a high-resolution flow karyotype of the dog.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 1996
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

B TraskLawrence Livermore National Laboratory, Biomedical Sciences Division, CA 94550.
G van den Engh
B Mayall
J W Gray
Lawrence Livermore National Laboratory · US

Funding

MOLECULAR CYTOGENETICS IN PRE AND NEONATAL DIAGNOSISR01HD017665 · NICHD · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI PINKEL, DANIEL · 1985 to 1999
–
NICHD NIH HHS HD-17665
6 · The paper itself

Abstract

Maternal and paternal homologues of many chromosome types can be differentiated on the basis of their peak position in Hoechst 33258 versus chromomycin A3 bivariate flow karyotypes. We demonstrate here the magnitude of DNA content differences among normal chromosomes of the same type. Significant peak-position differences between homologues were observed for an average of four chromosome types in each of the karyotypes of 98 different individuals. The frequency of individuals with differences in homologue peak positions varied among chromosome types: e.g., chromosome 15, 61%; chromosome 3, 4%. Flow karyotypes of 33 unrelated individuals were compared to determine the range of peak position among normal chromosomes. Chromosomes Y, 21, 22, 15, 16, 13, 14, and 19 were most heteromorphic, and chromosomes 2-8 and X were least heteromorphic. The largest chromosome 21 was 45% larger than the smallest 21 chromosome observed. The base composition of the variable regions differed among chromosome types. DNA contents of chromosome variants determined from flow karyotypes were closely correlated to measurements of DNA content made of gallocyanin chrome alum-stained metaphase chromosomes on slides. Fluorescence in situ hybridization with chromosome-specific repetitive sequences indicated that variability in their copy number is partly responsible for peak-position variability in some chromosomes. Heteromorphic chromosomes are identified for which parental flow karyotype information will be essential if de novo rearrangements resulting in small DNA content changes are to be detected with flow karyotyping.

Indexed as

BisbenzimidazoleChromomycin A3Chromosomes, HumanDNAFlow CytometryFluorescent DyesHeterochromatinHumansIndolesKaryotypingNucleic Acid HybridizationPolymorphism, GeneticRepetitive Sequences, Nucleic AcidBisbenzimidazoleChromomycin A3DAPIDNAFluorescent DyesHeterochromatinIndoles

Identifiers

PMID2479266
PMCPMC1683437
OpenAlexW1823395

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.