Evidence map›Paper›PMID 24792419›Full record

ArticleJournal of molecular biology2015

In vivo roles of BamA, BamB and BamD in the biogenesis of BamA, a core protein of the β-barrel assembly machine of Escherichia coli.

Rajeev Misra, Ryan Stikeleather, Rebecca Gabriele

Abstract read
In one paragraph

Article in Journal of molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 71 citations in OpenAlex.

  1. Review
  2. A mechanism for substrate quality control in outer membrane protein assembly.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Effects of pleiotropicJournal of bacteriology · 2024
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. High-throughput suppressor screen demonstrates that RcsF monitors outer membrane integrity and not Bam complex function.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Review
  14. Review
  15. Article
  16. The gain-of-function alleleProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Article
  18. Suppressor Mutations inJournal of bacteriology · 2019
    Article
  19. Article
  20. Protein Secretion in Spirochetes.Microbiology spectrum · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Rajeev MisraSchool of Life Sciences, Arizona State University, Tempe, AZ 85287, USA. Electronic address: rajeev.misra@asu.edu.
Ryan StikeleatherSchool of Life Sciences, Arizona State University, Tempe, AZ 85287, USA.
Rebecca GabrieleSchool of Life Sciences, Arizona State University, Tempe, AZ 85287, USA.
Arizona State University · US

Funding

TARGETING AND ASSEMBLY OF E COLI OUTER MEMBRANE PROTEINSR01GM048167 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI MISRA, RAJEEV · 1997 to 2011
$2.4M
TARGETING &ASSEMBLY OF E COLI OUTER MEMBRANE PROTEINSR29GM048167 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI MISRA, RAJEEV · 1992 to 1996
–
NIGMS NIH HHS GM048167NIGMS NIH HHS R01 GM048167
6 · The paper itself

Abstract

Assembly of the β-barrel outer membrane proteins (OMPs) is an essential cellular process in Gram-negative bacteria and in the mitochondria and chloroplasts of eukaryotes--two organelles of bacterial origin. Central to this process is the conserved β-barrel OMP that belongs to the Omp85 superfamily. In Escherichia coli, BamA is the core β-barrel OMP and, together with four outer membrane lipoproteins, BamBCDE, constitutes the β-barrel assembly machine (BAM). In this paper, we investigated the roles of BamD, an essential lipoprotein, and BamB in BamA biogenesis. Depletion of BamD caused impairment in BamA biogenesis and cessation of cell growth. These defects of BamD depletion were partly reversed by single-amino-acid substitutions mapping within the β-barrel domain of BamA. However, in the absence of BamB, the positive effects of the β-barrel substitutions on BamA biogenesis under BamD depletion conditions were nullified. By employing a BamA protein bearing one such substitution, F474L, it was demonstrated that the mutant BamA protein could not only assemble without BamD but also facilitate the assembly of wild-type BamA expressed in trans. Based on these data, we propose a model in which the Bam lipoproteins, which are localized to the outer membrane by the BAM-independent Lol pathway, aid in the creation of new BAM complexes by serving as outer membrane receptors and folding factors for nascent BamA molecules. The newly assembled BAM holocomplex then catalyzes the assembly of substrate OMPs and BamA. These in vivo findings are corroborated by recently published in vitro data.

Indexed as

Amino Acid SubstitutionBacterial Outer Membrane ProteinsEscherichia coliEscherichia coli ProteinsLipoproteinsOrganelle BiogenesisProtein FoldingBacterial Outer Membrane ProteinsBamA protein, E coliBamB protein, E coliBamD protein, E coliEscherichia coli ProteinsLipoproteinsBAM complexgeneticsβ-barrel outer membrane protein assembly

Identifiers

PMID24792419
PMCPMC4216770
OpenAlexW2021763665

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.