Evidence map›Paper›PMID 24791135›Full record

ArticleMolecular vision2014

Identification of genetic loci associated with primary angle-closure glaucoma in the basset hound.

Dina F Ahram, Amy C Cook, Helga Kecova, Sinisa D Grozdanic, Markus H Kuehn

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Clinical Signs and Diagnosis of the Canine Primary Glaucomas.The Veterinary clinics of North America. Small animal practice · 2015
    Review
  7. Review
  8. Article
  9. A common genetic variant as an effect modifier for primary angle closure glaucoma.International journal of clinical and experimental medicine · 2015
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Dina F AhramInterdisciplinary Graduate Program in Genetics, Iowa City, IA ; Department of Ophthalmology and Visual Sciences, Iowa City, IA.
Amy C CookDepartment of Ophthalmology and Visual Sciences, Iowa City, IA.
Helga KecovaDepartment of Ophthalmology and Visual Sciences, Iowa City, IA.
Sinisa D GrozdanicAnimal Eye Consultants of Iowa, North Liberty, Iowa.
Markus H KuehnInterdisciplinary Graduate Program in Genetics, Iowa City, IA ; Department of Ophthalmology and Visual Sciences, Iowa City, IA.
University of Iowa · USJMI Laboratories · US

Funding

The Role of Complement System in GlaucomaR01EY019485 · NEI · UNIVERSITY OF IOWA · PI KUEHN, MARKUS H. · 2009 to 2012
$1.5M
Unfolded Protein Response in Glaucoma PathogenesisR01EY022044 · NEI · UNIVERSITY OF IOWA · PI KUEHN, MARKUS H. · 2012 to 2014
$1.1M
NEI NIH HHS R01 EY019485NEI NIH HHS R01 EY022044
6 · The paper itself

Abstract

purposePrimary angle-closure glaucoma (PACG) in dogs is usually caused by the gradual collapse of the iridocorneal angle and cleft, eventually leading to aqueous humor (AH) outflow obstruction. The condition occurs in several breeds of dogs and the prognosis for affected animals is typically poor. We have identified several basset hound (BH) pedigrees, as well as unrelated cases with characteristic PACG that in many aspects recapitulates PACG in human patients. The goal of this study was to utilize the BH PACG model to characterize the genetics of PACG, and potentially discover genetic factors contributing to PACG in humans and animals.

methodsWe conducted a genome-wide logistic regression test for association using 37 PACG cases and 41 unaffected controls. Population stratification and cryptic relatedness were assessed using a multidimensional scaling analysis. The expression of two candidate genes within the target tissues of the BH eye was assessed by immunohistochemistry.

resultsWe report significant associations at two novel loci, specifically BICF2P31912 in COL1A2 on chromosome 14 with a per-allele odds ratio (OR, 95% confidence interval [CI]) of 3.35 (1.73-6.51), P(genome)=3.6×10⁻⁴; and BICF2P893476 residing in proximity to RAB22A on chromosome 24 with a per-allele OR (95% CI) of 3.93 (1.78-8.66), P(genome)=4.9×10⁻⁴. COL1A2 and RAB22A demonstrated widespread expression throughout the eye and were prominently noted in the ciliary body (CB), trabecular meshwork (TM), and iris.

conclusionsOur finding of two genetic associations supports the potential segregation of PACG risk-conferring variants in the BH. The genetic associations identified may contribute to mechanisms underlying the pathogenesis of PACG, which remain to be elucidated.

Indexed as

Genetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyAllelesAnimalsChromosomes, MammalianDog DiseasesDogsFemaleGlaucoma, Angle-ClosureHumansImmunohistochemistryMalePedigreePolymorphism, Single Nucleotide

Identifiers

PMID24791135
PMCPMC4000717
OpenAlexW104644112

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.