Evidence map›Paper›PMID 24790092›Full record

ArticleThe Journal of biological chemistry2014

Structural basis for multiple sugar recognition of Jacalin-related human ZG16p lectin.

Mayumi Kanagawa, Yan Liu, Shinya Hanashima, Akemi Ikeda, Wengang Chai, Yukiko Nakano, Kyoko Kojima-Aikawa, Ten Feizi, Yoshiki Yamaguchi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Article
  3. Soluble Human Lectins at the Host-Microbe Interface.Annual review of biochemistry · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. A molecularly engineered antiviral banana lectin inhibits fusion and is efficacious against influenza virus infection in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Article
  11. Article
  12. Structure-function characterization of an insecticidal protein GNIP1Aa, a member of an MACPF and β-tripod families.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Article
  14. Recognition of microbial glycans by soluble human lectins.Current opinion in structural biology · 2017
    Review
  15. Article
  16. Article
  17. Gram-positive bacteria are held at a distance in the colon mucus by the lectin-like protein ZG16.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Mayumi KanagawaFrom the Structural Glycobiology Team, Systems Glycobiology Research Group, RIKEN-Max Planck Joint Research Center, RIKEN Global Research Cluster, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
Yan Liuthe Department of Medicine, Glycosciences Laboratory, Imperial College London, Burlington Danes Building, Du Cane Road, London W12 0NN, United Kingdom, yan.liu2@imperial.ac.uk.
Shinya HanashimaFrom the Structural Glycobiology Team, Systems Glycobiology Research Group, RIKEN-Max Planck Joint Research Center, RIKEN Global Research Cluster, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
Akemi IkedaFrom the Structural Glycobiology Team, Systems Glycobiology Research Group, RIKEN-Max Planck Joint Research Center, RIKEN Global Research Cluster, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
Wengang Chaithe Department of Medicine, Glycosciences Laboratory, Imperial College London, Burlington Danes Building, Du Cane Road, London W12 0NN, United Kingdom.
Yukiko Nakanothe Graduate School of Humanities and Sciences, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan, and the The Glycoscience Institute, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan.
Kyoko Kojima-Aikawathe Graduate School of Humanities and Sciences, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan, and the The Glycoscience Institute, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan.
Ten Feizithe Department of Medicine, Glycosciences Laboratory, Imperial College London, Burlington Danes Building, Du Cane Road, London W12 0NN, United Kingdom.
Yoshiki YamaguchiFrom the Structural Glycobiology Team, Systems Glycobiology Research Group, RIKEN-Max Planck Joint Research Center, RIKEN Global Research Cluster, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan, yyoshiki@riken.jp.
RIKEN · JPImperial College London · GBOchanomizu University · JP

Funding

Wellcome TrustWellcome Trust WT093378MAWellcome Trust WT099197MA
6 · The paper itself

Abstract

ZG16p is a soluble mammalian lectin, the first to be described with a Jacalin-related β-prism-fold. ZG16p has been reported to bind both to glycosaminoglycans and mannose. To determine the structural basis of the multiple sugar-binding properties, we conducted glycan microarray analyses of human ZG16p. We observed that ZG16p preferentially binds to α-mannose-terminating short glycans such as Ser/Thr-linked O-mannose, but not to high mannose-type N-glycans. Among sulfated glycosaminoglycan oligomers examined, chondroitin sulfate B and heparin oligosaccharides showed significant binding. Crystallographic studies of human ZG16p lectin in the presence of selected ligands revealed the mechanism of multiple sugar recognition. Manα1-3Man and Glcβ1-3Glc bound in different orientations: the nonreducing end of the former and the reducing end of the latter fitted in the canonical shallow mannose binding pocket. Solution NMR analysis using (15)N-labeled ZG16p defined the heparin-binding region, which is on an adjacent flat surface of the protein. On-array competitive binding assays suggest that it is possible for ZG16p to bind simultaneously to both types of ligands. Recognition of a broad spectrum of ligands by ZG16p may account for the multiple functions of this lectin in the formation of zymogen granules via glycosaminoglycan binding, and in the recognition of pathogens in the digestive system through α-mannose-related recognition.

Indexed as

Amino Acid SequenceBinding SitesGlycosaminoglycansHumansLectinsMannoseMolecular Docking SimulationMolecular Sequence DataProtein BindingGlycosaminoglycansLectinsMannoseZG16 protein, humanCarbohydrate RecognitionCrystal StructureHeparinLectinMannoseMicroarrayNuclear Magnetic Resonance (NMR)ZG16p

Identifiers

PMID24790092
PMCPMC4059138
OpenAlexW2023577844

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.