Evidence map›Paper›PMID 24788106›Full record

ArticlePloS one2014

ComQXPA quorum sensing systems may not be unique to Bacillus subtilis: a census in prokaryotic genomes.

Iztok Dogsa, Kumari Sonal Choudhary, Ziva Marsetic, Sanjarbek Hudaiberdiev, Roberto Vera, Sándor Pongor, Ines Mandic-Mulec

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
  7. Salt TolerantPlants (Basel, Switzerland) · 2022
    Article
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  10. Revealing plant growth-promoting mechanisms ofFrontiers in plant science · 2022
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. ComX-Induced Exoproteases Degrade ComX inFrontiers in microbiology · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Iztok DogsaDepartment of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Kumari Sonal ChoudharyGroup of Protein Structure and Bioinformatics, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy.
Ziva MarseticDepartment of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Sanjarbek HudaiberdievGroup of Protein Structure and Bioinformatics, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy.
Roberto VeraGroup of Protein Structure and Bioinformatics, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy; Faculty of Information Technology and Bionics, Pázmány Péter Catholic University, Budapest, Hungary.
Sándor PongorGroup of Protein Structure and Bioinformatics, International Centre for Genetic Engineering and Biotechnology, Trieste, Italy; Faculty of Information Technology and Bionics, Pázmány Péter Catholic University, Budapest, Hungary.
Ines Mandic-MulecDepartment of Food Science and Technology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia.
International Centre for Genetic Engineering and Biotechnology · ITUniversity of Ljubljana · SIPázmány Péter Catholic University · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The comQXPA locus of Bacillus subtilis encodes a quorum sensing (QS) system typical of Gram positive bacteria. It encodes four proteins, the ComQ isoprenyl transferase, the ComX pre-peptide signal, the ComP histidine kinase, and the ComA response regulator. These are encoded by four adjacent genes all situated on the same chromosome strand. Here we present results of a comprehensive census of comQXPA-like gene arrangements in 2620 complete and 6970 draft prokaryotic genomes (sequenced by the end of 2013). After manually checking the data for false-positive and false-negative hits, we found 39 novel com-like predictions. The census data show that in addition to B. subtilis and close relatives, 20 comQXPA-like loci are predicted to occur outside the B. subtilis clade. These include some species of Clostridiales order, but none outside the phylum Firmicutes. Characteristic gene-overlap patterns were observed in comQXPA loci, which were different for the B. subtilis-like and non-B. subtilis-like clades. Pronounced sequence variability associated with the ComX peptide in B. subtilis clade is evident also in the non-B. subtilis clade suggesting grossly similar evolutionary constraints in the underlying quorum sensing systems.

Indexed as

Acyl-ButyrolactonesBacillus subtilisConsensus SequenceGenetic LociGenetic VariationGenome, BacterialGenomicsQuorum SensingAcyl-Butyrolactones

Identifiers

PMID24788106
PMCPMC4008528
OpenAlexW2124104731

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.