Evidence map›Paper›PMID 24786965›Full record

ArticleBiochemistry2014

Analysis of SecA dimerization in solution.

Andy J Wowor, Yuetian Yan, Sarah M Auclair, Dongmei Yu, Jun Zhang, Eric R May, Michael L Gross, Debra A Kendall, James L Cole

Abstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Binding of SecA ATPase monomers and dimers to lipid vesicles.Biochimica et biophysica acta. Biomembranes · 2020
    Article
  6. Article
  7. Stabilization of SecA ATPase by the primary cytoplasmic salt of Escherichia coli.Protein science : a publication of the Protein Society · 2019
    Article
  8. Article
  9. Protein translocation: what's the problem?Biochemical Society transactions · 2016
    Review
  10. Channel crossing: how are proteins shipped across the bacterial plasma membrane?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Andy J WoworDepartment of Pharmaceutical Sciences, University of Connecticut , Storrs, Connecticut 06269, United States.
Yuetian Yan
Sarah M Auclair
Dongmei Yu
Jun Zhang
Eric R May
Michael L Gross
Debra A Kendall
James L Cole

Funding

TrainingP41GM103422 · NIGMS · WASHINGTON UNIVERSITY · PI YARASHESKI, KEVIN E · 2012 to 2019
$12.0M
REDESIGN OF STRUCTURAL REGIONS OF ALKALINE PHOSPHATASER01GM037639 · NIGMS · UNIVERSITY OF CONNECTICUT STORRS · PI KENDALL, DEBRA A · 1987 to 2011
$3.8M
NIGMS NIH HHS 8 P41 GM103422-36NIGMS NIH HHS GM037639
6 · The paper itself

Abstract

The Sec pathway mediates translocation of protein across the inner membrane of bacteria. SecA is a motor protein that drives translocation of preprotein through the SecYEG channel. SecA reversibly dimerizes under physiological conditions, but different dimer interfaces have been observed in SecA crystal structures. Here, we have used biophysical approaches to address the nature of the SecA dimer that exists in solution. We have taken advantage of the extreme salt sensitivity of SecA dimerization to compare the rates of hydrogen-deuterium exchange of the monomer and dimer and have analyzed the effects of single-alanine substitutions on dimerization affinity. Our results support the antiparallel dimer arrangement observed in one of the crystal structures of Bacillus subtilis SecA. Additional residues lying within the preprotein binding domain and the C-terminus are also protected from exchange upon dimerization, indicating linkage to a conformational transition of the preprotein binding domain from an open to a closed state. In agreement with this interpretation, normal mode analysis demonstrates that the SecA dimer interface influences the global dynamics of SecA such that dimerization stabilizes the closed conformation.

Indexed as

Adenosine TriphosphatasesAmino Acid SubstitutionBacillus subtilisBacterial ProteinsCrystallography, X-RayEscherichia coliMembrane Transport ProteinsProtein MultimerizationProtein Structure, QuaternarySecA ProteinsSEC Translocation ChannelsAdenosine TriphosphatasesBacterial ProteinsMembrane Transport ProteinsSecA ProteinsSEC Translocation Channels

Identifiers

PMID24786965
PMCPMC4030788

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.