Evidence map›Paper›PMID 24786772›Full record

ArticleBlood2014

Integrated genetic approaches identify the molecular mechanisms of Sox4 in early B-cell development: intricate roles for RAG1/2 and CK1ε.

Saradhi Mallampati, Baohua Sun, Yue Lu, Haiqing Ma, Yun Gong, Donghai Wang, Ju-Seog Lee, Kevin Lin, Xiaoping Sun

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. SOX on tumors, a comfort or a constraint?Cell death discovery · 2024
    Review
  5. Article
  6. Article
  7. Zebrafish: a convenient tool for myelopoiesis research.Cell regeneration (London, England) · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. SOX11 Inhibitors Are Cytotoxic in Mantle Cell Lymphoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. SOXC Genes and the Control of Skeletogenesis.Current osteoporosis reports · 2016
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Saradhi MallampatiDepartment of Laboratory Medicine and the Center for Stem Cell and Developmental Biology.
Baohua SunDepartment of Laboratory Medicine and the Center for Stem Cell and Developmental Biology.
Yue LuDepartment of Molecular Carcinogenesis, and.
Haiqing MaDepartment of Laboratory Medicine and the Center for Stem Cell and Developmental Biology.
Yun GongDepartment of Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX;
Donghai WangDivision of Infectious Disease and Immunology, Department of Medicine, University of Massachusetts Medical School, Worcester, MA; and.
Ju-Seog LeeDepartment of System Biology, The University of Texas MD Anderson Cancer Center, Houston, TX.
Kevin LinDepartment of Molecular Carcinogenesis, and.
Xiaoping SunDepartment of Laboratory Medicine and the Center for Stem Cell and Developmental Biology.
Genesis Foundation · USThe University of Texas MD Anderson Cancer Center · USUniversity of Massachusetts Chan Medical School · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Censoring Inflammation by Protein GeranylgeranylationR01AI110695 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WANG, DONGHAI · 2015 to 2019
$2.1M
Study Sox4 regulated genes in B cell development in a novel in vitro systemR21AI103652 · NIAID · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SUN, XIAOPING · 2014 to 2015
$440k
Role of Sox4 in B Cell DevelopmentR03AI079779 · NIAID · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SUN, XIAOPING · 2010 to 2011
$157k
NCI NIH HHS CA016672NCI NIH HHS P30 CA016672NIAID NIH HHS 5R03AI079779-02NIAID NIH HHS R03 AI079779NIAID NIH HHS R21 AI103652
6 · The paper itself

Abstract

Commitment of hematopoietic stem cells to B lineage precursors and subsequent development of B lineage precursors into mature B cells is stringently controlled by stage-specific transcription factors. In this study, we used integrated genetic approaches and systematically determined the role of Sry-related high mobility group box (Sox) 4 and the underlying molecular mechanisms in early B-cell development. We found that Sox4 coordinates multilevel controls in the differentiation of early stage B cells. At the molecular level, Sox4 orchestrates a unique gene regulatory program, and its function was predominantly mediated through a conventional Sox4-binding motif as well as an unconventional GA-binding protein α chain binding motif. Our integrated gene network and functional analysis indicated that Sox4 functions as a bimodular transcription factor and ensures B lineage precursor differentiation through 2 distinct mechanisms. It positively induces gene rearrangements at immunoglobulin heavy chain gene loci by transcriptionally activating the Rag1 and Rag2 genes and negatively regulates Wnt signaling, which is critical for self-renewal, by inducing the expression of casein kinase 1 ε. Our findings illustrate that Sox4 mediates critical fine-tuning of the 2 opposing forces in early B-cell development and also set forth a model for characterization of critical genes whose deficiency, like Sox4 deficiency, is detrimental to this process.

Indexed as

AnimalsB-LymphocytesCasein Kinase 1 epsilonCell DifferentiationDNA-Binding ProteinsGene Expression Regulation, EnzymologicHomeodomain ProteinsMiceMice, KnockoutSOXC Transcription FactorsTranscription, GeneticWnt Signaling PathwayCasein Kinase 1 epsilonDNA-Binding ProteinsHomeodomain ProteinsRAG-1 proteinRag2 protein, mouseSox4 protein, mouseSOXC Transcription Factors

Identifiers

PMID24786772
PMCPMC4073324
OpenAlexW2050623157

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.