Evidence map›Paper›PMID 24784569›Full record

ArticleViruses2014

Molecular phylogeny of hantaviruses harbored by insectivorous bats in Côte d'Ivoire and Vietnam.

Se Hun Gu, Burton K Lim, Blaise Kadjo, Satoru Arai, Jeong-Ah Kim, Violaine Nicolas, Aude Lalis, Christiane Denys, Joseph A Cook, Samuel R Dominguez and 8 more

Abstract read
In one paragraph

Article in Viruses, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Evidence of Hantavirus Infection Among Bats in Brazil.The American journal of tropical medicine and hygiene · 2015
    Article
  17. Novel hantavirus identified in black-bearded tomb bats, China.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2015
    Article
  18. Co-circulation of soricid- and talpid-borne hantaviruses in Poland.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2014
    Article
  19. Article
  20. Genetic Diversity of Talpa Europaea and Nova Hanta Virus (NVAV) in France.Bulletin de l'Academie veterinaire de France · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Se Hun GuPacific Center for Emerging Infectious Diseases Research, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI 96813, USA. sehungu@hawaii.edu.
Burton K LimDepartment of Natural History, Royal Ontario Museum, Toronto, ON M5S 2C6, Canada. burtonl@rom.on.ca.
Blaise KadjoDepartment of Biology, Université de Cocody, Abidjan 22, Côte d'Ivoire. blaisekadjo1@hotmail.com.
Satoru AraiInfectious Disease Surveillance Center, National Institute of Infectious Diseases, Tokyo 162-8640, Japan. arais@nih.go.jp.
Jeong-Ah KimDepartment of Microbiology, College of Medicine, Korea University, Seoul 136-705, Korea. youminlove3@hotmail.com.
Violaine NicolasDepartement Systematique et Evolution, UMR CNRS 7205, Muséum National d'Histoire Naturelle, Paris 75005, France. vnicolas@mnhn.fr.
Aude LalisDepartement Systematique et Evolution, UMR CNRS 7205, Muséum National d'Histoire Naturelle, Paris 75005, France. lalis@mnhn.fr.
Christiane DenysDepartement Systematique et Evolution, UMR CNRS 7205, Muséum National d'Histoire Naturelle, Paris 75005, France. denys@mnhn.fr.
Joseph A CookDepartment of Biology, Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM 87131, USA. cookjose@unm.edu.
Samuel R DominguezDepartment of Pediatrics, School of Medicine, University of Colorado, Aurora, CO 80045, USA. samuel.dominguez@ucdenver.edu.
Kathryn V HolmesDepartment of Pediatrics, School of Medicine, University of Colorado, Aurora, CO 80045, USA. Kathryn.Holmes@ucdenver.edu.
Lela UrushadzeNational Center for Disease Control and Public Health, Tbilisi 0177, Georgia. lelincdc@gmail.com.
Ketevan SidamonidzeNational Center for Disease Control and Public Health, Tbilisi 0177, Georgia. keti_sida@yahoo.com.
Davit PutkaradzeNational Center for Disease Control and Public Health, Tbilisi 0177, Georgia. dato.putkaradze@yahoo.com.
Ivan V KuzminPacific Center for Emerging Infectious Diseases Research, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI 96813, USA. sehungu@hawaii.edu.
Michael Y KosoyPacific Center for Emerging Infectious Diseases Research, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI 96813, USA. burtonl@rom.on.ca.
Jin-Won SongDepartment of Microbiology, College of Medicine, Korea University, Seoul 136-705, Korea. jwsong@korea.ac.kr.
Richard YanagiharaPacific Center for Emerging Infectious Diseases Research, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI 96813, USA. ryanagih@hawaii.edu.

Funding

Small Grants ProgramP30GM114737 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI NERURKAR, VIVEK RAMCHANDRA · 2015 to 2022
$8.1M
Pacific Center for Emerging Infectious Diseases ResearchP20GM103516 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI YANAGIHARA, RICHARD · 2012 to 2014
$6.1M
Pilot Project ProgramP30GM103341 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI SHOHET, RALPH V. · 2012 to 2016
$5.5M
Intraspecies Transmission and Infectivity of Insectivore-Borne HantavirusesR01AI075057 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI YANAGIHARA, RICHARD · 2008 to 2011
$1.5M
NIAID NIH HHS R01 AI075057NIAID NIH HHS R01AI075057NIGMS NIH HHS P20 GM103516NIGMS NIH HHS P30 GM103341NIGMS NIH HHS P30 GM114737
6 · The paper itself

Abstract

The recent discovery of genetically distinct hantaviruses in multiple species of shrews and moles prompted a further exploration of their host diversification by analyzing frozen, ethanol-fixed and RNAlater®-preserved archival tissues and fecal samples from 533 bats (representing seven families, 28 genera and 53 species in the order Chiroptera), captured in Asia, Africa and the Americas in 1981-2012, using RT-PCR. Hantavirus RNA was detected in Pomona roundleaf bats (Hipposideros pomona) (family Hipposideridae), captured in Vietnam in 1997 and 1999, and in banana pipistrelles (Neoromicia nanus) (family Vespertilionidae), captured in Côte d'Ivoire in 2011. Phylogenetic analysis, based on the full-length S- and partial M- and L-segment sequences using maximum likelihood and Bayesian methods, demonstrated that the newfound hantaviruses formed highly divergent lineages, comprising other recently recognized bat-borne hantaviruses in Sierra Leone and China. The detection of bat-associated hantaviruses opens a new era in hantavirology and provides insights into their evolutionary origins.

Indexed as

Genetic VariationPhylogenyAnimalsChiropteraCluster AnalysisCote d'IvoireOrthohantavirusReverse Transcriptase Polymerase Chain ReactionRNA, ViralSequence Analysis, DNAVietnamRNA, Viral

Identifiers

PMID24784569
PMCPMC4036548

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.