Evidence map›Paper›PMID 24783204›Full record

ArticleBioMed research international2014

RNA sequencing reveals upregulation of RUNX1-RUNX1T1 gene signatures in clear cell renal cell carcinoma.

Zuquan Xiong, Hongjie Yu, Yan Ding, Chenchen Feng, Hanming Wei, Sha Tao, Dan Huang, Siqun Lilly Zheng, Jielin Sun, Jianfeng Xu and 1 more

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. RUNX1 promotes liver fibrosis progression through regulating TGF-β signalling.International journal of experimental pathology · 2023
    Article
  4. New insights into fibrotic signaling in renal cell carcinoma.Frontiers in cell and developmental biology · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Zuquan XiongDepartment of Urology, Huashan Hospital, Fudan University, 12 Central Urumqi Road, Shanghai 200040, China.
Hongjie YuFudan-VARI Center for Genetic Epidemiology, School of Life Sciences, Fudan University, Shanghai 200433, China.
Yan DingLaboratory of Bioinformatics, Center for Genetic Epidemiology and Prevention, Van Andel Research Institute, 333 Bostwick Avenue NE, Grand Rapids, MI 49503, USA.
Chenchen FengDepartment of Urology, Huashan Hospital, Fudan University, 12 Central Urumqi Road, Shanghai 200040, China.
Hanming WeiFudan-VARI Center for Genetic Epidemiology, School of Life Sciences, Fudan University, Shanghai 200433, China.
Sha TaoCenter for Cancer Genomics, Wake Forest University School of Medicine, Medical Center Boulevard, Winston-Salem, NC 27157, USA.
Dan HuangLaboratory of Computational, Laboratory of Genomics and Prevention, Center for Genetic Epidemiology and Prevention, Van Andel Research Institute, 333 Bostwick Avenue NE, Grand Rapids, MI 49503, USA.
Siqun Lilly ZhengCenter for Cancer Genomics, Wake Forest University School of Medicine, Medical Center Boulevard, Winston-Salem, NC 27157, USA.
Jielin SunCenter for Cancer Genomics, Wake Forest University School of Medicine, Medical Center Boulevard, Winston-Salem, NC 27157, USA.
Jianfeng XuDepartment of Urology, Huashan Hospital, Fudan University, 12 Central Urumqi Road, Shanghai 200040, China ; Fudan-VARI Center for Genetic Epidemiology, School of Life Sciences, Fudan University, Shanghai 200433, China ; Center for Cancer Genomics, Wake Forest University School of Medicine, Medical Center Boulevard, Winston-Salem, NC 27157, USA.
Zujun FangDepartment of Urology, Huashan Hospital, Fudan University, 12 Central Urumqi Road, Shanghai 200040, China.
Fudan University · CNWake Forest University · USVan Andel Institute · USHuashan Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the past few years, therapies targeted at the von Hippel-Lindau (VHL) and hypoxia-inducible factor (HIF) pathways, such as sunitinib and sorafenib, have been developed to treat clear cell renal cell carcinoma (ccRCC). However, the majority of patients will eventually show resistance to antiangiogenesis therapies. The purpose of our study was to identify novel pathways that could be potentially used as targets for new therapies. Whole transcriptome sequencing (RNA-Seq) was conducted on eight matched tumor and adjacent normal tissue samples. A novel RUNX1-RUNX1T1 pathway was identified which was upregulated in ccRCC through gene set enrichment analysis (GSEA). We also confirmed the findings based on previously published gene expression microarray data. Our data shows that upregulated of the RUNX1-RUNX1T1 gene set maybe an important factor contributing to the etiology of ccRCC.

Indexed as

AdultAgedBase SequenceCarcinoma, Renal CellCore Binding Factor Alpha 2 SubunitGene Expression Regulation, NeoplasticHumansKidney NeoplasmsMaleMiddle AgedMolecular Sequence DataProto-Oncogene ProteinsRNARUNX1 Translocation Partner 1 ProteinSequence Analysis, RNATranscription FactorsCore Binding Factor Alpha 2 SubunitProto-Oncogene ProteinsRNARUNX1 protein, humanRUNX1T1 protein, humanRUNX1 Translocation Partner 1 ProteinTranscription Factors

Identifiers

PMID24783204
PMCPMC3982423
OpenAlexW2052143324

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.