Evidence map›Paper›PMID 24782546›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Quantitative phosphoproteomic analysis reveals system-wide signaling pathways downstream of SDF-1/CXCR4 in breast cancer stem cells.

Tingfang Yi, Bo Zhai, Yonghao Yu, Yoshikawa Kiyotsugu, Thomas Raschle, Manuel Etzkorn, Hee-Chan Seo, Michal Nagiec, Rafael E Luna, Ellis L Reinherz and 3 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 124 citations in OpenAlex.

  1. Article
  2. Spiegelmer Aptamers: Innovative Approach in Breast Cancer.Breast cancer : basic and clinical research · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. CDKN1A/p21 in Breast Cancer: Part of the Problem, or Part of the Solution?International journal of molecular sciences · 2023
    Review
  11. Mass spectrometry-based phosphoproteomics in clinical applications.Trends in analytical chemistry : TRAC · 2023
    Article
  12. Review
  13. Article
  14. Tumour Stem Cells in Breast Cancer.International journal of molecular sciences · 2022
    Review
  15. Review
  16. Review
  17. Annals of translational medicine · 2021
    Article
  18. Article
  19. Article
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Tingfang YiDepartment of Biological Chemistry and Molecular Pharmacology and.
Bo ZhaiDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115; and.
Yonghao YuDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115; and.
Yoshikawa KiyotsuguDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02115.
Thomas RaschleDepartment of Biological Chemistry and Molecular Pharmacology and.
Manuel EtzkornDepartment of Biological Chemistry and Molecular Pharmacology and.
Hee-Chan SeoDepartment of Biological Chemistry and Molecular Pharmacology and.
Michal NagiecDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115; and.
Rafael E LunaDepartment of Biological Chemistry and Molecular Pharmacology and.
Ellis L ReinherzDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02115.
John BlenisDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115; and.
Steven P GygiDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115; and steven_gygi@hms.harvard.edu gerhard_wagner@hms.harvard.edu.
Gerhard WagnerDepartment of Biological Chemistry and Molecular Pharmacology and steven_gygi@hms.harvard.edu gerhard_wagner@hms.harvard.edu.
Harvard University · USHarvard University Press · US

Funding

ONCOGENIC REGULATION OF S6 PROTEIN KINASE &CELL GROWTHR01CA046595 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI JOHN BLENIS · 1988 to 2026
$10.6M
STRUCTURAL BASIS OF TRANSLATION INITIATION BY EIF-4ER01CA068262 · NCI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1996 to 2015
$3.6M
NCI NIH HHS CA068262NCI NIH HHS R01 CA046595NCI NIH HHS R01 CA068262
6 · The paper itself

Abstract

Breast cancer is the leading cause of cancer-related mortality in women worldwide, with an estimated 1.7 million new cases and 522,000 deaths around the world in 2012 alone. Cancer stem cells (CSCs) are essential for tumor reoccurrence and metastasis which is the major source of cancer lethality. G protein-coupled receptor chemokine (C-X-C motif) receptor 4 (CXCR4) is critical for tumor metastasis. However, stromal cell-derived factor 1 (SDF-1)/CXCR4-mediated signaling pathways in breast CSCs are largely unknown. Using isotope reductive dimethylation and large-scale MS-based quantitative phosphoproteome analysis, we examined protein phosphorylation induced by SDF-1/CXCR4 signaling in breast CSCs. We quantified more than 11,000 phosphorylation sites in 2,500 phosphoproteins. Of these phosphosites, 87% were statistically unchanged in abundance in response to SDF-1/CXCR4 stimulation. In contrast, 545 phosphosites in 266 phosphoproteins were significantly increased, whereas 113 phosphosites in 74 phosphoproteins were significantly decreased. SDF-1/CXCR4 increases phosphorylation in 60 cell migration- and invasion-related proteins, of them 43 (>70%) phosphoproteins are unrecognized. In addition, SDF-1/CXCR4 upregulates the phosphorylation of 44 previously uncharacterized kinases, 8 phosphatases, and 1 endogenous phosphatase inhibitor. Using computational approaches, we performed system-based analyses examining SDF-1/CXCR4-mediated phosphoproteome, including construction of kinase-substrate network and feedback regulation loops downstream of SDF-1/CXCR4 signaling in breast CSCs. We identified a previously unidentified SDF-1/CXCR4-PKA-MAP2K2-ERK signaling pathway and demonstrated the feedback regulation on MEK, ERK1/2, δ-catenin, and PPP1Cα in SDF-1/CXCR4 signaling in breast CSCs. This study gives a system-wide view of phosphorylation events downstream of SDF-1/CXCR4 signaling in breast CSCs, providing a resource for the study of CSC-targeted cancer therapy.

Indexed as

AnimalsBreast NeoplasmsCell Line, TumorChemokine CXCL12Feedback, PhysiologicalFemaleHumansMiceMice, SCIDNeoplasm MetastasisNeoplastic Stem CellsPhosphorylationProteomicsReceptors, CXCR4Signal TransductionChemokine CXCL12CXCR4 protein, humanReceptors, CXCR4chemokine receptorGPCRMAPK

Identifiers

PMID24782546
PMCPMC4040611
OpenAlexW2088231318

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.