Evidence map›Paper›PMID 24782440›Full record

ArticleMolecular biology and evolution2014

Expression evolution facilitated the convergent neofunctionalization of a sodium channel gene.

Ammon Thompson, Derek Vo, Caitlin Comfort, Harold H Zakon

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. The genetic foundations of convergent traits.Nature reviews. Genetics · 2026
    Review
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  10. Electric organ discharge diversification in mormyrid weakly electric fish is associated with differential expression of voltage-gated ion channel genes.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2017
    Article
  11. Article
  12. Towards Consensus Gene Ages.Genome biology and evolution · 2016
    Article
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  14. Article
  15. Complex Homology and the Evolution of Nervous Systems.Trends in ecology & evolution · 2016
    Review
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ammon ThompsonDepartment of Integrative Biology, University of Texas at AustinDepartment of Neuroscience, University of Texas at Austin ammonthompson@gmail.com.
Derek VoDepartment of Integrative Biology, University of Texas at Austin.
Caitlin ComfortDepartment of Integrative Biology, University of Texas at Austin.
Harold H ZakonDepartment of Integrative Biology, University of Texas at AustinDepartment of Neuroscience, University of Texas at AustinJosephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, MA.
The University of Texas at Austin · USMarine Biological Laboratory · US

Funding

Evolution of sodium channel genesR01GM084879 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ZAKON, HAROLD H · 2008 to 2011
$1.4M
NIGMS NIH HHS GM084879NIGMS NIH HHS R01 GM084879
6 · The paper itself

Abstract

Ion channels have played a substantial role in the evolution of novel traits across all of the domains of life. A fascinating example of a novel adaptation is the convergent evolution of electric organs in the Mormyroid and Gymnotiform electric fishes. The regulated currents that flow through ion channels directly generate the electrical signals which have evolved in these fish. Here, we investigated how the expression evolution of two sodium channel paralogs (Scn4aa and Scn4ab) influenced their convergent molecular evolution following the teleost-specific whole-genome duplication. We developed a reliable assay to accurately measure the expression stoichiometry of these genes and used this technique to analyze relative expression of the duplicate genes in a phylogenetic context. We found that before a major shift in expression from skeletal muscle and neofunctionalization in the muscle-derived electric organ, Scn4aa was first downregulated in the ancestors of both electric lineages. This indicates that underlying the convergent evolution of this gene, there was a greater propensity toward neofunctionalization due to its decreased expression relative to its paralog Scn4ab. We investigated another derived muscle tissue, the sonic organ of Porichthys notatus, and show that, as in the electric fishes, Scn4aa again shows a radical shift in expression away from the ancestral muscle cells into the evolutionarily novel muscle-derived tissue. This study presents evidence that expression downregulation facilitates neofunctionalization after gene duplication, a pattern that may often set the stage for novel trait evolution after gene duplication.

Indexed as

AnimalsEvolution, MolecularFish ProteinsGene DuplicationGene Expression RegulationGymnotiformesModels, GeneticMuscle, SkeletalPhylogenySelection, GeneticVoltage-Gated Sodium ChannelsFish ProteinsVoltage-Gated Sodium Channelsdosage balanceevolutiongene duplicationgene expressionneofunctionalizationquantitative PCR

Identifiers

PMID24782440
PMCPMC4104310
OpenAlexW2151049514

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.